Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | EHC68_RS03210 | Genome accession | NZ_CP034305 |
| Coordinates | 614295..614723 (-) | Length | 142 a.a. |
| NCBI ID | WP_009698754.1 | Uniprot ID | A0A8B3DN92 |
| Organism | Vibrio parahaemolyticus strain 20151116002-3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 609295..619723
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC68_RS03190 (EHC68_03225) | coaE | 609814..610428 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| EHC68_RS03195 (EHC68_03230) | pilD | 610429..611298 (-) | 870 | WP_031855539.1 | A24 family peptidase | Machinery gene |
| EHC68_RS03200 (EHC68_03235) | pilC | 611363..612586 (-) | 1224 | WP_023585959.1 | type II secretion system F family protein | Machinery gene |
| EHC68_RS03205 (EHC68_03240) | pilB | 612610..614295 (-) | 1686 | WP_031855538.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EHC68_RS03210 (EHC68_03245) | pilA | 614295..614723 (-) | 429 | WP_009698754.1 | type IV pilin protein | Machinery gene |
| EHC68_RS03215 (EHC68_03250) | nadC | 614987..615874 (-) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| EHC68_RS03220 (EHC68_03255) | ampD | 615975..616514 (+) | 540 | Protein_516 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| EHC68_RS03225 (EHC68_03260) | pdhR | 616918..617676 (+) | 759 | Protein_517 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14524.57 Da Isoelectric Point: 5.7554
>NTDB_id=330584 EHC68_RS03210 WP_009698754.1 614295..614723(-) (pilA) [Vibrio parahaemolyticus strain 20151116002-3]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
Nucleotide
Download Length: 429 bp
>NTDB_id=330584 EHC68_RS03210 WP_009698754.1 614295..614723(-) (pilA) [Vibrio parahaemolyticus strain 20151116002-3]
ATGAAAACGAATAAACAAAAAAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACGACAAATATTGATACCTTCATTGCTGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
ATGAAAACGAATAAACAAAAAAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACGACAAATATTGATACCTTCATTGCTGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae strain A1552 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae C6706 |
51.299 |
100 |
0.556 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.951 |
100 |
0.493 |
| pilA | Pseudomonas aeruginosa PAK |
45.27 |
100 |
0.472 |
| pilA | Acinetobacter baumannii strain A118 |
35.294 |
100 |
0.38 |