Detailed information NTG0330581

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EHC68_RS03195
• Genome accession: NZ_CP034305
• Coordinates: 610429..611298 (-)
• Length: 289 a.a.
• NCBI ID: WP_031855539.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 20151116002-3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 605429..616298

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHC68_RS03160 (EHC68_03195)	rpsP	606420..606668 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
EHC68_RS03165 (EHC68_03200)	rimM	606697..607245 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
EHC68_RS03170 (EHC68_03205)	trmD	607273..608016 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
EHC68_RS03175 (EHC68_03210)	rplS	608058..608411 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
EHC68_RS03180 (EHC68_03215)	yacG	608783..608977 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
EHC68_RS03185 (EHC68_03220)	zapD	609046..609786 (-)	741	WP_023624252.1	cell division protein ZapD	-
EHC68_RS03190 (EHC68_03225)	coaE	609814..610428 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
EHC68_RS03195 (EHC68_03230)	pilD	610429..611298 (-)	870	WP_031855539.1	A24 family peptidase	Machinery gene
EHC68_RS03200 (EHC68_03235)	pilC	611363..612586 (-)	1224	WP_023585959.1	type II secretion system F family protein	Machinery gene
EHC68_RS03205 (EHC68_03240)	pilB	612610..614295 (-)	1686	WP_031855538.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EHC68_RS03210 (EHC68_03245)	pilA	614295..614723 (-)	429	WP_009698754.1	type IV pilin protein	Machinery gene
EHC68_RS03215 (EHC68_03250)	nadC	614987..615874 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32419.51 Da
• Isoelectric Point: 7.1972

>NTDB_id=330581 EHC68_RS03195 WP_031855539.1 610429..611298(-) (pilD) [Vibrio parahaemolyticus strain 20151116002-3]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQEAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=330581 EHC68_RS03195 WP_031855539.1 610429..611298(-) (pilD) [Vibrio parahaemolyticus strain 20151116002-3]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGAAGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGGTGGGTGAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTTACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45