Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   EHF38_RS01645 Genome accession   NZ_CP034092
Coordinates   344619..345620 (+) Length   333 a.a.
NCBI ID   WP_000079199.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339619..350620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF38_RS01615 (EHF38_01615) - 341199..341329 (-) 131 Protein_306 hypothetical protein -
  EHF38_RS01620 (EHF38_01620) rpoZ 341368..341646 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EHF38_RS01625 (EHF38_01625) gmk 341719..342348 (-) 630 WP_000015936.1 guanylate kinase -
  EHF38_RS01630 (EHF38_01630) ispH 342471..343421 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EHF38_RS01635 (EHF38_01635) fimU 343591..344064 (+) 474 WP_001214068.1 GspH/FimT family pseudopilin Machinery gene
  EHF38_RS01640 (EHF38_01640) pilV 344058..344618 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  EHF38_RS01645 (EHF38_01645) pilW 344619..345620 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  EHF38_RS01650 (EHF38_01650) pilX 345617..346435 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EHF38_RS01655 (EHF38_01655) - 346447..349974 (+) 3528 Protein_314 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35899.59 Da        Isoelectric Point: 6.3350

>NTDB_id=328872 EHF38_RS01645 WP_000079199.1 344619..345620(+) (pilW) [Acinetobacter baumannii strain A52]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGTKN
AAGNFAYYTIPQYRVAAQAARDASPTVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQHVHAADNRNRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=328872 EHF38_RS01645 WP_000079199.1 344619..345620(+) (pilW) [Acinetobacter baumannii strain A52]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCTAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTACGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAACTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGCATGTGCATGCTGCTGATAACAGAAATCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.799

100

0.988

Multiple sequence alignment