Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   VV7356_RS05010 Genome accession   NZ_CP041683
Coordinates   1034461..1035087 (+) Length   208 a.a.
NCBI ID   WP_011078149.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1029461..1040087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS05000 (VV7356_05050) - 1030718..1032505 (-) 1788 WP_026130416.1 ATP-binding protein -
  VV7356_RS05005 (VV7356_05055) tig 1033057..1034355 (+) 1299 WP_011149844.1 trigger factor -
  VV7356_RS05010 (VV7356_05060) clpP 1034461..1035087 (+) 627 WP_011078149.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  VV7356_RS05015 (VV7356_05065) clpX 1035158..1036438 (+) 1281 WP_011078148.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  VV7356_RS05020 (VV7356_05070) lon 1036557..1038908 (+) 2352 WP_017788737.1 endopeptidase La -
  VV7356_RS05025 (VV7356_05075) - 1039102..1039374 (+) 273 WP_013572181.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22952.31 Da        Isoelectric Point: 5.0212

>NTDB_id=327897 VV7356_RS05010 WP_011078149.1 1034461..1035087(+) (clpP) [Vibrio vulnificus strain 7356]
MSYQEKNAMSPIIDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSP
GGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIK
TKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVLTHRSA

Nucleotide


Download         Length: 627 bp        

>NTDB_id=327897 VV7356_RS05010 WP_011078149.1 1034461..1035087(+) (clpP) [Vibrio vulnificus strain 7356]
ATGAGCTACCAAGAAAAAAATGCAATGTCGCCAATTATCGACGCACTAGTACCAATGGTGGTTGAACAAACTTCCCGTGG
TGAACGTTCTTACGATATTTATTCGCGTTTGCTAAAAGAGCGAGTGATTTTCCTCACCGGACAGGTTGAAGACCACATGG
CAAACCTTGTCGTGGCTCAGCTACTTTTCCTAGAGTCTGAGAACCCAGACAAAGATATCTTCCTTTACATTAACTCTCCA
GGTGGCAGCGTGACAGCAGGTATGTCGATTTACGACACAATGCAGTTCATCAAGCCAAATGTGAGCACAGTATGTATGGG
TCAAGCATGTTCAATGGGTGCATTTTTGCTTGCTGGTGGTGCACCAGGTAAGCGTTATGTGCTACCTAACTCACGTGTGA
TGATTCACCAGCCACTCGGTGGTTTCCAAGGTCAAGCGTCAGACATCCAAATTCATGCTCAGGAAATTCTTACAATTAAG
ACTAAGCTGAACAAGTTGTTGGCAGAACACACTGGCCAACCTTTGGAAGTGATTGAGCGTGATACTGATCGCGATAATTT
TATGTCGGCAGATCAGGCAGTAGAATACGGTTTGGTGGATGCAGTATTGACTCATCGTAGTGCATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

70.526

91.346

0.644
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.894

90.385

0.587
  clpP Streptococcus pneumoniae R6

54.124

93.269

0.505
  clpP Streptococcus pneumoniae TIGR4

54.124

93.269

0.505
  clpP Streptococcus pneumoniae D39

54.124

93.269

0.505
  clpP Streptococcus pneumoniae Rx1

54.124

93.269

0.505
  clpP Lactococcus lactis subsp. cremoris KW2

52.062

93.269

0.486
  clpP Streptococcus thermophilus LMG 18311

52.604

92.308

0.486
  clpP Streptococcus thermophilus LMD-9

52.604

92.308

0.486
  clpP Streptococcus mutans UA159

51.813

92.788

0.481
  clpP Streptococcus pyogenes JRS4

52.105

91.346

0.476
  clpP Streptococcus pyogenes MGAS315

52.105

91.346

0.476
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.515

93.269

0.471

Multiple sequence alignment