Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FNV65_RS08840 Genome accession   NZ_CP041612
Coordinates   1870245..1870898 (+) Length   217 a.a.
NCBI ID   WP_054233834.1    Uniprot ID   A0A250VJP6
Organism   Streptomyces sp. S1A1-8     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1865245..1875898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV65_RS08825 (FNV65_08950) - 1866803..1867812 (-) 1010 Protein_1816 IS110 family transposase -
  FNV65_RS08830 (FNV65_08955) - 1868178..1868660 (-) 483 WP_143600466.1 VOC family protein -
  FNV65_RS08835 (FNV65_08960) - 1868819..1870042 (+) 1224 WP_143612575.1 epoxide hydrolase family protein -
  FNV65_RS08840 (FNV65_08965) clpP 1870245..1870898 (+) 654 WP_054233834.1 ATP-dependent Clp protease proteolytic subunit Regulator
  FNV65_RS08845 (FNV65_08970) clpP 1870900..1871502 (+) 603 WP_054233833.1 ATP-dependent Clp protease proteolytic subunit Regulator
  FNV65_RS56710 (FNV65_08975) - 1871572..1872045 (-) 474 WP_097283232.1 helix-turn-helix transcriptional regulator -
  FNV65_RS08855 (FNV65_08980) - 1872133..1872654 (-) 522 WP_079089687.1 DinB family protein -
  FNV65_RS08860 (FNV65_08985) - 1872929..1873156 (+) 228 WP_054233831.1 DUF5133 domain-containing protein -
  FNV65_RS08865 (FNV65_08990) - 1873266..1874609 (-) 1344 WP_164331635.1 diacylglycerol kinase family protein -
  FNV65_RS08870 (FNV65_08995) - 1874823..1875266 (-) 444 WP_054233829.1 response regulator -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23611.63 Da        Isoelectric Point: 5.0747

>NTDB_id=327271 FNV65_RS08840 WP_054233834.1 1870245..1870898(+) (clpP) [Streptomyces sp. S1A1-8]
MTPLITGRYPAHAPRAEDGDTPATRFDDHLAAQLLAQRIVLLGTQVDEVSANRVCAQLLVLSAEDPRTDISLYINSPGGS
VTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLSVGTHGKRYALPNARIMMHQPSAGIGGTTADIEIQAQNLEFTKQAI
ERITAEHTGQSEETISRDGDRDRWFTAEQAKEYGMVDRVVESLDDVRPAASRRRMGL

Nucleotide


Download         Length: 654 bp        

>NTDB_id=327271 FNV65_RS08840 WP_054233834.1 1870245..1870898(+) (clpP) [Streptomyces sp. S1A1-8]
ATGACTCCACTCATCACCGGCCGGTACCCGGCCCACGCACCGCGCGCCGAGGACGGCGACACCCCCGCGACCCGCTTCGA
CGACCACCTGGCCGCCCAGCTGCTCGCGCAGCGCATCGTCCTGCTCGGCACCCAGGTCGACGAGGTGTCCGCGAACCGGG
TCTGCGCCCAGCTGCTCGTACTGTCGGCGGAGGACCCGCGCACCGACATCAGCCTGTACATCAACAGCCCGGGCGGCTCG
GTGACCGCGGGACTCGCGATCTACGACACCATGCGGCTGATCCCCAACGACGTCTCGACCCTCGCCATGGGATTCGCCGC
GAGCATGGGGCAGTTCCTGCTCAGCGTCGGCACCCACGGCAAGCGGTACGCGCTGCCCAACGCGCGGATCATGATGCACC
AACCGTCGGCGGGCATCGGCGGCACCACCGCAGACATCGAGATCCAGGCGCAGAACCTGGAGTTCACCAAGCAGGCCATC
GAGCGGATCACCGCGGAGCACACCGGCCAGAGCGAGGAGACGATCTCCCGGGACGGCGACCGCGACCGCTGGTTCACGGC
CGAACAGGCCAAGGAGTACGGCATGGTGGACCGGGTCGTGGAGTCGCTCGACGACGTCCGCCCGGCCGCGTCACGGCGAC
GGATGGGGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A250VJP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

82.028

0.41
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.711

79.724

0.396
  clpP Streptococcus pneumoniae D39

47.399

79.724

0.378
  clpP Streptococcus pneumoniae R6

47.399

79.724

0.378
  clpP Streptococcus pneumoniae TIGR4

47.399

79.724

0.378
  clpP Streptococcus pneumoniae Rx1

47.399

79.724

0.378
  clpP Lactococcus lactis subsp. cremoris KW2

46.286

80.645

0.373
  clpP Streptococcus pyogenes JRS4

46.286

80.645

0.373
  clpP Streptococcus pyogenes MGAS315

46.286

80.645

0.373
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.714

80.645

0.369
  clpP Streptococcus thermophilus LMG 18311

45.665

79.724

0.364
  clpP Streptococcus thermophilus LMD-9

45.665

79.724

0.364