Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FNV66_RS12295 Genome accession   NZ_CP041607
Coordinates   2367601..2368257 (+) Length   218 a.a.
NCBI ID   WP_097283746.1    Uniprot ID   -
Organism   Streptomyces sp. S1D4-14     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 2362601..2373257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV66_RS12265 (FNV66_12425) ureG 2363011..2363694 (-) 684 WP_054228976.1 urease accessory protein UreG -
  FNV66_RS12270 (FNV66_12430) - 2363831..2364505 (-) 675 WP_143600937.1 urease accessory protein UreF -
  FNV66_RS12275 (FNV66_12435) - 2364505..2366226 (-) 1722 WP_054228978.1 urease subunit alpha -
  FNV66_RS12280 (FNV66_12440) - 2366219..2366530 (-) 312 WP_143600938.1 urease subunit beta -
  FNV66_RS12285 (FNV66_12445) - 2366548..2366850 (-) 303 WP_143600939.1 urease subunit gamma -
  FNV66_RS12290 (FNV66_12450) - 2367120..2367398 (-) 279 WP_060902456.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  FNV66_RS12295 (FNV66_12455) clpP 2367601..2368257 (+) 657 WP_097283746.1 ATP-dependent Clp protease proteolytic subunit Regulator
  FNV66_RS12300 (FNV66_12460) - 2368265..2368570 (+) 306 WP_054228981.1 hypothetical protein -
  FNV66_RS12305 (FNV66_12465) - 2369107..2369580 (+) 474 WP_054228982.1 C40 family peptidase -
  FNV66_RS12310 (FNV66_12470) - 2369668..2370189 (+) 522 WP_097283747.1 DUF6328 family protein -
  FNV66_RS12315 (FNV66_12475) - 2370531..2370989 (-) 459 WP_054228985.1 ATP-binding protein -
  FNV66_RS12320 (FNV66_12480) - 2371202..2372059 (+) 858 WP_097283748.1 helix-turn-helix transcriptional regulator -
  FNV66_RS12325 (FNV66_12485) - 2372073..2372297 (+) 225 WP_075025332.1 DUF397 domain-containing protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23516.60 Da        Isoelectric Point: 4.7681

>NTDB_id=327083 FNV66_RS12295 WP_097283746.1 2367601..2368257(+) (clpP) [Streptomyces sp. S1D4-14]
MNEPSARHVLPEFTERTSTGHRTLDPYSKLLDERIVFLGTPIDDTSANDVMAQFMHLEYLAPDQDIALYINSPGGSFSAM
TAIYDTMQFVSCDVETTCLGQAASAAAVLLAGGAPGKRFALPGARVLIHQPSLPEPVQGQASDLALQAEELMRTRRLLED
MLVRHTGQSPEQVAADIERDKILDAQAALAYGLVDGIIPSRKTSRTAPGARNATPDAR

Nucleotide


Download         Length: 657 bp        

>NTDB_id=327083 FNV66_RS12295 WP_097283746.1 2367601..2368257(+) (clpP) [Streptomyces sp. S1D4-14]
ATGAATGAACCGTCCGCCCGTCATGTCCTGCCCGAGTTCACCGAGCGGACGAGCACGGGGCACCGGACCCTGGATCCGTA
CTCGAAGCTGCTCGACGAGCGGATCGTGTTCCTCGGGACGCCGATCGACGACACCTCGGCGAACGACGTGATGGCGCAGT
TCATGCACCTCGAATACCTGGCGCCGGACCAGGACATCGCGCTGTACATCAACTCCCCCGGCGGCTCGTTCAGTGCGATG
ACGGCGATCTACGACACGATGCAGTTCGTCAGCTGCGACGTGGAGACCACCTGCCTGGGGCAGGCCGCGTCGGCCGCCGC
CGTGCTGCTGGCCGGCGGCGCGCCGGGCAAGCGGTTCGCGCTGCCGGGGGCCCGGGTGCTGATCCACCAGCCGTCACTTC
CCGAGCCGGTACAGGGACAGGCGAGCGATCTGGCCCTCCAGGCCGAGGAGTTGATGCGCACTCGGAGGCTGCTGGAGGAC
ATGCTCGTACGGCACACGGGGCAGAGTCCTGAACAGGTCGCCGCCGACATCGAGCGGGACAAGATCCTGGACGCTCAGGC
CGCGTTGGCGTACGGACTGGTGGACGGGATCATCCCCAGCCGCAAGACCTCGCGCACCGCGCCCGGTGCGAGGAACGCCA
CACCCGACGCGAGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

45.596

88.532

0.404
  clpP Streptococcus pneumoniae D39

45.596

88.532

0.404
  clpP Streptococcus pneumoniae R6

45.596

88.532

0.404
  clpP Streptococcus pneumoniae TIGR4

45.596

88.532

0.404
  clpP Bacillus subtilis subsp. subtilis str. 168

45.55

87.615

0.399
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.032

86.697

0.399
  clpP Streptococcus mutans UA159

44.33

88.991

0.394
  clpP Streptococcus thermophilus LMG 18311

43.299

88.991

0.385
  clpP Streptococcus thermophilus LMD-9

43.299

88.991

0.385
  clpP Streptococcus pyogenes JRS4

42.784

88.991

0.381
  clpP Streptococcus pyogenes MGAS315

42.784

88.991

0.381
  clpP Lactococcus lactis subsp. cremoris KW2

42.268

88.991

0.376
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.487

88.532

0.376