Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SPN23F_RS05685 Genome accession   NC_011900
Coordinates   1094263..1095072 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae ATCC 700669     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089263..1100072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN23F_RS05665 (SPN23F11170) - 1091620..1092606 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  SPN23F_RS05670 (SPN23F11180) - 1092854..1093627 (-) 774 WP_000731139.1 potassium channel family protein -
  SPN23F_RS05675 (SPN23F11190) - 1093674..1093928 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE family toxin -
  SPN23F_RS05680 (SPN23F11200) relB 1093930..1094172 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  SPN23F_RS05685 (SPN23F11210) vicX 1094263..1095072 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  SPN23F_RS05690 (SPN23F11220) micB 1095074..1096423 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SPN23F_RS05695 (SPN23F11230) micA 1096416..1097120 (-) 705 WP_000722076.1 response regulator YycF Regulator
  SPN23F_RS05700 (SPN23F11240) mutY 1097175..1098350 (-) 1176 WP_000886152.1 A/G-specific adenine glycosylase -
  SPN23F_RS14115 - 1098447..1098572 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=32679 SPN23F_RS05685 WP_001289493.1 1094263..1095072(-) (vicX) [Streptococcus pneumoniae ATCC 700669]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=32679 SPN23F_RS05685 WP_001289493.1 1094263..1095072(-) (vicX) [Streptococcus pneumoniae ATCC 700669]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACTTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment