Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   EGX80_RS00085 Genome accession   NZ_CP033815
Coordinates   16075..16257 (-) Length   60 a.a.
NCBI ID   WP_029714017.1    Uniprot ID   A0A5S4TLJ0
Organism   Streptococcus pyogenes strain FDAARGOS_514     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 16075..61850 16075..16257 within 0


Gene organization within MGE regions


Location: 16075..61850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX80_RS00085 (EGX80_00085) prx 16075..16257 (-) 183 WP_029714017.1 hypothetical protein Regulator
  EGX80_RS00090 (EGX80_00090) - 16456..16665 (-) 210 WP_011054450.1 helix-turn-helix transcriptional regulator -
  EGX80_RS09980 - 16819..16965 (+) 147 WP_011054449.1 hypothetical protein -
  EGX80_RS00095 (EGX80_00095) - 17106..17357 (+) 252 WP_011054448.1 hypothetical protein -
  EGX80_RS00100 (EGX80_00100) - 17621..17860 (+) 240 WP_011054447.1 hypothetical protein -
  EGX80_RS00105 (EGX80_00105) - 17918..18274 (+) 357 WP_011054446.1 hypothetical protein -
  EGX80_RS00110 (EGX80_00110) - 18390..19598 (-) 1209 WP_011054445.1 glucosaminidase domain-containing protein -
  EGX80_RS00115 (EGX80_00115) - 19714..19941 (-) 228 WP_011054444.1 phage holin -
  EGX80_RS00120 (EGX80_00120) - 19938..20213 (-) 276 WP_002987582.1 hypothetical protein -
  EGX80_RS00125 (EGX80_00125) - 20223..20840 (-) 618 WP_010922094.1 DUF1366 domain-containing protein -
  EGX80_RS00130 (EGX80_00130) - 20843..21274 (-) 432 WP_002983467.1 DUF1617 family protein -
  EGX80_RS00135 (EGX80_00135) - 21286..23304 (-) 2019 WP_011106754.1 gp58-like family protein -
  EGX80_RS00140 (EGX80_00140) - 23314..24423 (-) 1110 WP_023609821.1 hyaluronidase HylP -
  EGX80_RS00145 (EGX80_00145) - 24423..26570 (-) 2148 WP_023605202.1 phage tail spike protein -
  EGX80_RS00150 (EGX80_00150) - 26567..27274 (-) 708 WP_011054553.1 distal tail protein Dit -
  EGX80_RS00155 (EGX80_00155) - 27274..31197 (-) 3924 WP_011054554.1 phage tail tape measure protein -
  EGX80_RS09985 - 31210..31359 (-) 150 WP_023609816.1 hypothetical protein -
  EGX80_RS00160 (EGX80_00160) - 31407..31733 (-) 327 WP_011054556.1 hypothetical protein -
  EGX80_RS00165 (EGX80_00165) - 31786..32397 (-) 612 WP_011054557.1 major tail protein -
  EGX80_RS00170 (EGX80_00170) - 32416..32841 (-) 426 WP_011054558.1 hypothetical protein -
  EGX80_RS00175 (EGX80_00175) - 32838..33215 (-) 378 WP_011054559.1 HK97-gp10 family putative phage morphogenesis protein -
  EGX80_RS00180 (EGX80_00180) - 33212..33550 (-) 339 WP_011054560.1 phage head closure protein -
  EGX80_RS00185 (EGX80_00185) - 33547..33849 (-) 303 WP_011054561.1 head-tail connector protein -
  EGX80_RS10295 - 33852..33980 (-) 129 WP_011054562.1 hypothetical protein -
  EGX80_RS00190 (EGX80_00190) - 33994..35178 (-) 1185 WP_011054563.1 phage major capsid protein -
  EGX80_RS00195 (EGX80_00195) - 35204..35869 (-) 666 WP_011054564.1 head maturation protease, ClpP-related -
  EGX80_RS00200 (EGX80_00200) - 35847..37067 (-) 1221 WP_011054565.1 phage portal protein -
  EGX80_RS00205 (EGX80_00205) - 37101..37367 (-) 267 WP_011054566.1 hypothetical protein -
  EGX80_RS09990 - 37360..37530 (-) 171 WP_011054567.1 hypothetical protein -
  EGX80_RS00210 (EGX80_00210) - 37527..39281 (-) 1755 WP_011054568.1 terminase TerL endonuclease subunit -
  EGX80_RS00215 (EGX80_00215) - 39296..39763 (-) 468 WP_011054569.1 phage terminase small subunit P27 family -
  EGX80_RS00220 (EGX80_00220) - 39935..40273 (-) 339 WP_002985375.1 HNH endonuclease signature motif containing protein -
  EGX80_RS00230 (EGX80_00230) - 40859..41299 (-) 441 WP_011054571.1 ArpU family phage packaging/lysis transcriptional regulator -
  EGX80_RS00240 (EGX80_00240) - 41572..42207 (-) 636 WP_011054572.1 N-6 DNA methylase -
  EGX80_RS00245 (EGX80_00245) - 42207..42608 (-) 402 WP_011054573.1 hypothetical protein -
  EGX80_RS00250 (EGX80_00250) - 42799..43196 (-) 398 Protein_50 SAM-dependent methyltransferase -
  EGX80_RS00255 (EGX80_00255) - 43198..43482 (-) 285 WP_011106747.1 hypothetical protein -
  EGX80_RS00260 (EGX80_00260) - 43479..43682 (-) 204 WP_011054575.1 hypothetical protein -
  EGX80_RS00265 (EGX80_00265) - 43666..43986 (-) 321 WP_011054576.1 VRR-NUC domain-containing protein -
  EGX80_RS00270 (EGX80_00270) - 43983..44396 (-) 414 WP_008087509.1 hypothetical protein -
  EGX80_RS00275 (EGX80_00275) - 44658..46131 (-) 1474 Protein_55 phage/plasmid primase, P4 family -
  EGX80_RS00280 (EGX80_00280) - 46121..46933 (-) 813 WP_011106664.1 bifunctional DNA primase/polymerase -
  EGX80_RS00285 (EGX80_00285) - 46936..47394 (-) 459 WP_011054580.1 DUF669 domain-containing protein -
  EGX80_RS00290 (EGX80_00290) - 47548..48498 (-) 951 WP_363128943.1 helicase-related protein -
  EGX80_RS00295 (EGX80_00295) - 48737..49414 (-) 678 Protein_59 AAA family ATPase -
  EGX80_RS10305 (EGX80_00300) - 49527..49894 (-) 368 Protein_60 siphovirus Gp157 family protein -
  EGX80_RS00305 (EGX80_00305) - 50123..50437 (-) 315 WP_011054583.1 helix-turn-helix transcriptional regulator -
  EGX80_RS10310 - 50453..50587 (-) 135 WP_002995985.1 hypothetical protein -
  EGX80_RS00310 (EGX80_00310) - 50584..50880 (-) 297 WP_011054584.1 MerR family transcriptional regulator -
  EGX80_RS00315 (EGX80_00315) - 50958..51143 (-) 186 WP_011054585.1 helix-turn-helix transcriptional regulator -
  EGX80_RS00320 (EGX80_00320) - 51310..51549 (+) 240 WP_011054586.1 hypothetical protein -
  EGX80_RS00325 (EGX80_00325) - 51700..51909 (+) 210 WP_002984292.1 hypothetical protein -
  EGX80_RS00335 (EGX80_00335) - 52125..52364 (-) 240 WP_011054588.1 helix-turn-helix transcriptional regulator -
  EGX80_RS00340 (EGX80_00340) - 52438..52824 (+) 387 WP_011054589.1 hypothetical protein -
  EGX80_RS00345 (EGX80_00345) - 52813..53019 (-) 207 WP_011054590.1 hypothetical protein -
  EGX80_RS00350 (EGX80_00350) - 53076..53855 (+) 780 WP_011054591.1 hypothetical protein -
  EGX80_RS00355 (EGX80_00355) - 53989..54135 (-) 147 WP_011054593.1 hypothetical protein -
  EGX80_RS00360 (EGX80_00360) - 54507..55295 (+) 789 WP_021340822.1 S24 family peptidase -
  EGX80_RS00365 (EGX80_00365) - 55305..55610 (+) 306 WP_011106738.1 membrane protein -
  EGX80_RS00370 (EGX80_00370) - 55730..56818 (+) 1089 WP_011054595.1 site-specific integrase -
  EGX80_RS00375 (EGX80_00375) - 57181..57801 (+) 621 WP_011054596.1 DUF3862 domain-containing protein -
  EGX80_RS00380 (EGX80_00380) glgP 58058..60322 (-) 2265 WP_011054597.1 glycogen/starch/alpha-glucan family phosphorylase -
  EGX80_RS00385 (EGX80_00385) malQ 60357..61850 (-) 1494 WP_002984251.1 4-alpha-glucanotransferase -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6890.90 Da        Isoelectric Point: 4.1947

>NTDB_id=326013 EGX80_RS00085 WP_029714017.1 16075..16257(-) (prx) [Streptococcus pyogenes strain FDAARGOS_514]
MLTYDEFKQAIDNGYITADTVAIVRKNGLIFDYVLPHESVRSCEIVIEERVAEVMVELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=326013 EGX80_RS00085 WP_029714017.1 16075..16257(-) (prx) [Streptococcus pyogenes strain FDAARGOS_514]
ATGCTAACATACGACGAGTTTAAGCAAGCGATTGACAATGGATATATCACAGCAGACACAGTAGCGATCGTGCGTAAAAA
CGGATTGATATTTGATTATGTGTTGCCGCACGAGTCTGTGAGATCGTGTGAGATTGTGATCGAGGAGAGGGTGGCGGAGG
TGATGGTGGAATTAGACAAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5S4TLJ0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

100

100

1

  prx Streptococcus pyogenes MGAS315

80

100

0.8

  prx Streptococcus pyogenes MGAS315

75

100

0.75

  prx Streptococcus pyogenes MGAS315

73.333

100

0.733

  prx Streptococcus pyogenes MGAS8232

73.333

100

0.733

  prx Streptococcus pyogenes MGAS315

80.952

70

0.567

  prx Streptococcus pyogenes MGAS315

78.571

70

0.55


Multiple sequence alignment