NTDB

Detailed information

Bioinformatically predicted

Overview
Related MGE
Sequence
Domains
Secondary structure
3D structure
Transmembrane helices
Similar proteins

Overview

Name	clpP	Type	Regulator
Locus tag	EGX72_RS04185	Genome accession	NZ_CP033809
Coordinates	745035..745625 (+)	Length	196 a.a.
NCBI ID	WP_000613483.1	Uniprot ID	A0AAV3JHA0
Organism	Streptococcus sp. FDAARGOS_521
Function	degradation of ComX (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	745744..746875	745035..745625	flank	119

Gene organization within MGE regions

Location: 745035..746875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGX72_RS04185 (EGX72_04180)	clpP	745035..745625 (+)	591	WP_000613483.1	ATP-dependent Clp protease proteolytic subunit	Regulator
EGX72_RS04190 (EGX72_04185)	-	745744..746875 (+)	1132	Protein_754	ISAs1-like element IS1548 family transposase	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21550.52 Da Isoelectric Point: 4.5933

                                >NTDB_id=325872 EGX72_RS04185 WP_000613483.1 745035..745625(+) (clpP) [Streptococcus sp. FDAARGOS_521]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQ

SIEKVHDDAERDRWMSAQETLDYGFIDAIMENNNLQ

Nucleotide

Download Length: 591 bp

                                >NTDB_id=325872 EGX72_RS04185 WP_000613483.1 745035..745625(+) (clpP) [Streptococcus sp. FDAARGOS_521]

ATGATTCCAGTAGTTATTGAACAAACAAGTCGTGGTGAACGTTCTTATGATATTTACTCACGTCTTTTAAAAGATCGTAT

TATTATGTTGACAGGCCAAGTTGAGGATAATATGGCCAATAGTATCATTGCACAGTTATTGTTTCTCGATGCACAAGATA

ATACAAAGGATATTTACCTTTATGTCAATACACCAGGTGGTTCAGTATCGGCTGGACTTGCTATTGTGGACACCATGAAC

TTCATTAAATCGGACGTACAGACGATTGTTATGGGGATGGCTGCTTCGATGGGAACCATTATTGCTTCAAGTGGTGCTAA

AGGAAAACGTTTTATGTTACCGAATGCAGAATATATGATCCACCAACCAATGGGCGGAACAGGCGGAGGTACACAGCAAT

CTGATATGGCTATCGCTGCTGAGCATCTTTTAAAAACGCGTCATACTTTAGAAAAAATCTTAGCTGATAATTCTGGTCAA

TCTATTGAAAAAGTCCATGATGATGCAGAGCGTGATCGTTGGATGAGTGCTCAAGAAACACTTGATTATGGCTTTATTGA

TGCTATTATGGAAAATAATAATTTACAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus thermophilus LMG 18311	92.347	100	0.923
clpP	Streptococcus thermophilus LMD-9	92.347	100	0.923
clpP	Streptococcus pneumoniae Rx1	92.308	99.49	0.918
clpP	Streptococcus pneumoniae D39	92.308	99.49	0.918
clpP	Streptococcus pneumoniae R6	92.308	99.49	0.918
clpP	Streptococcus pneumoniae TIGR4	92.308	99.49	0.918
clpP	Streptococcus pyogenes JRS4	89.286	100	0.893
clpP	Streptococcus pyogenes MGAS315	89.286	100	0.893
clpP	Streptococcus mutans UA159	88.776	100	0.888
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	85.204	100	0.852
clpP	Lactococcus lactis subsp. cremoris KW2	84.694	100	0.847
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.031	98.469	0.571
clpP	Bacillus subtilis subsp. subtilis str. 168	57.895	96.939	0.561

Detailed information NTG0325872