Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EGX95_RS12080 Genome accession   NZ_CP033795
Coordinates   1868797..1869378 (-) Length   193 a.a.
NCBI ID   WP_063246814.1    Uniprot ID   A0A3G5UAF8
Organism   Bacillus sp. FDAARGOS_527     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1863797..1874378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX95_RS12050 (EGX95_12050) - 1863814..1864650 (-) 837 WP_052760724.1 PP2C family serine/threonine-protein phosphatase -
  EGX95_RS12055 (EGX95_12055) - 1864634..1865119 (-) 486 WP_002080579.1 HIT family protein -
  EGX95_RS12060 (EGX95_12060) - 1865222..1865392 (-) 171 WP_001992228.1 hypothetical protein -
  EGX95_RS12065 (EGX95_12065) - 1865689..1866525 (-) 837 WP_001084753.1 ABC transporter permease -
  EGX95_RS12070 (EGX95_12070) - 1866518..1867723 (-) 1206 WP_000370623.1 quaternary amine ABC transporter ATP-binding protein -
  EGX95_RS12075 (EGX95_12075) - 1867894..1868751 (+) 858 WP_001227645.1 glycine betaine ABC transporter substrate-binding protein -
  EGX95_RS12080 (EGX95_12080) clpP 1868797..1869378 (-) 582 WP_063246814.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  EGX95_RS12085 (EGX95_12085) - 1869400..1870086 (-) 687 WP_000337489.1 RNA polymerase subunit sigma-70 -
  EGX95_RS12090 (EGX95_12090) - 1870230..1870550 (+) 321 WP_001125382.1 2Fe-2S iron-sulfur cluster-binding protein -
  EGX95_RS12095 (EGX95_12095) rpiA 1870555..1871217 (+) 663 WP_001049998.1 ribose 5-phosphate isomerase A -
  EGX95_RS12100 (EGX95_12100) - 1871326..1871760 (+) 435 WP_000555714.1 GNAT family N-acetyltransferase -
  EGX95_RS12105 (EGX95_12105) - 1871891..1873258 (-) 1368 WP_000795732.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21178.46 Da        Isoelectric Point: 5.3394

>NTDB_id=325750 EGX95_RS12080 WP_063246814.1 1868797..1869378(-) (clpP) [Bacillus sp. FDAARGOS_527]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLVKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=325750 EGX95_RS12080 WP_063246814.1 1868797..1869378(-) (clpP) [Bacillus sp. FDAARGOS_527]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTGAAAGA
CCGTATTATTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCGGGATTTGCTATATTAGATACA
ATGAATTTAGTCAAACCTGATGTACAAACGCTATGCATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCGAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCAAAAGGGCAGGCAA
CAGAAATTGAAATAACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G5UAF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.539

98.964

0.668
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus thermophilus LMD-9

54.688

99.482

0.544
  clpP Streptococcus pneumoniae Rx1

54.688

99.482

0.544
  clpP Streptococcus thermophilus LMG 18311

54.688

99.482

0.544
  clpP Streptococcus pneumoniae D39

54.688

99.482

0.544
  clpP Streptococcus pneumoniae R6

54.688

99.482

0.544
  clpP Streptococcus pneumoniae TIGR4

54.688

99.482

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

51.323

97.927

0.503
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487

Multiple sequence alignment