Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DHAF_RS24590 Genome accession   NC_011830
Coordinates   5259150..5259563 (-) Length   137 a.a.
NCBI ID   WP_005815182.1    Uniprot ID   -
Organism   Desulfitobacterium hafniense DCB-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5254150..5264563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DHAF_RS24570 (Dhaf_4930) lonC 5254979..5256937 (-) 1959 WP_005815189.1 Lon family ATP-dependent protease -
  DHAF_RS24575 (Dhaf_4931) rplI 5256964..5257410 (-) 447 WP_005815187.1 50S ribosomal protein L9 -
  DHAF_RS24580 (Dhaf_4932) - 5257453..5258415 (-) 963 WP_005815186.1 DUF2232 domain-containing protein -
  DHAF_RS24585 (Dhaf_4933) - 5258452..5258775 (-) 324 WP_005815184.1 MazG-like family protein -
  DHAF_RS25530 (Dhaf_4934) rpsR 5258898..5259128 (-) 231 WP_011462317.1 30S ribosomal protein S18 -
  DHAF_RS24590 (Dhaf_4935) ssbA 5259150..5259563 (-) 414 WP_005815182.1 single-stranded DNA-binding protein Machinery gene
  DHAF_RS24595 (Dhaf_4936) rpsF 5259579..5259866 (-) 288 WP_011462318.1 30S ribosomal protein S6 -
  DHAF_RS24600 (Dhaf_4937) ychF 5260013..5261113 (-) 1101 WP_005815179.1 redox-regulated ATPase YchF -
  DHAF_RS24605 (Dhaf_4938) - 5261193..5261393 (-) 201 WP_005815177.1 DUF951 domain-containing protein -
  DHAF_RS24610 (Dhaf_4939) - 5261450..5262241 (-) 792 WP_005815176.1 CvpA family protein -
  DHAF_RS26720 - 5262263..5262556 (-) 294 WP_080510953.1 PDDEXK nuclease domain-containing protein -
  DHAF_RS24615 (Dhaf_4941) - 5262681..5263325 (-) 645 WP_005815172.1 CBS and ACT domain-containing protein -
  DHAF_RS24620 (Dhaf_4942) - 5263440..5263841 (-) 402 WP_005815170.1 tetratricopeptide repeat protein -
  DHAF_RS24625 (Dhaf_4943) hypB 5263838..5264515 (-) 678 WP_005815169.1 hydrogenase nickel incorporation protein HypB -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14990.76 Da        Isoelectric Point: 5.2044

>NTDB_id=32508 DHAF_RS24590 WP_005815182.1 5259150..5259563(-) (ssbA) [Desulfitobacterium hafniense DCB-2]
MLNRVVLIGRLTKDPELRYTPNGVAVASFSLAVDRNFKNANGEREADFIPCVVYRQLAELCANYLAKGKLAAVDGRLQVR
TYDAQDGQRRWVYEVVAENVRFLSPKDGGNSGYGASSGASDAGTYGHEVSLDDDIPF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=32508 DHAF_RS24590 WP_005815182.1 5259150..5259563(-) (ssbA) [Desulfitobacterium hafniense DCB-2]
ATGTTGAACCGGGTTGTTTTAATAGGCCGTTTAACGAAAGACCCCGAGTTACGTTATACCCCGAACGGAGTTGCGGTGGC
CAGCTTTAGCTTAGCTGTGGATCGCAATTTCAAGAATGCTAACGGGGAACGGGAAGCGGATTTTATTCCATGTGTAGTAT
ATAGACAACTGGCTGAGCTTTGTGCGAATTATCTTGCCAAAGGTAAATTAGCAGCTGTCGACGGGCGGTTGCAGGTTCGC
ACTTATGATGCTCAAGATGGGCAACGCCGTTGGGTTTATGAGGTCGTCGCTGAGAACGTGCGCTTCCTTAGTCCCAAAGA
TGGCGGAAATTCCGGATATGGAGCATCTTCAGGAGCCAGTGATGCAGGGACTTATGGTCATGAAGTGAGCTTAGATGACG
ATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.159

78.102

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

42.941

100

0.533
  ssb Neisseria meningitidis MC58

36.628

100

0.46
  ssb Neisseria gonorrhoeae MS11

36.047

100

0.453
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.774

77.372

0.416
  ssb Vibrio cholerae strain A1552

30.233

100

0.38
  ssbB Streptococcus sobrinus strain NIDR 6715-7

37.956

100

0.38

Multiple sequence alignment