Detailed information NTG0324467

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: FIP52_RS10325
• Genome accession: NZ_CP041029
• Coordinates: 2163327..2164001 (-)
• Length: 224 a.a.
• NCBI ID: WP_014939008.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain WJ4
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2158327..2169001

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIP52_RS10300 (FIP52_10300)	-	2159976..2160434 (+)	459	WP_014939013.1	hypothetical protein	-
FIP52_RS10305 (FIP52_10305)	-	2160500..2161048 (+)	549	WP_014939012.1	hypothetical protein	-
FIP52_RS10310 (FIP52_10310)	-	2161073..2161771 (+)	699	WP_038693296.1	hypothetical protein	-
FIP52_RS10315 (FIP52_10315)	-	2161883..2162515 (+)	633	WP_014939010.1	hypothetical protein	-
FIP52_RS10320 (FIP52_10320)	-	2162542..2163255 (+)	714	WP_014939009.1	M949_RS01915 family surface polysaccharide biosynthesis protein	-
FIP52_RS10325 (FIP52_10325)	clpP	2163327..2164001 (-)	675	WP_014939008.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
FIP52_RS10330 (FIP52_10330)	dnaG	2164082..2166004 (-)	1923	WP_038693294.1	DNA primase	-
FIP52_RS10335 (FIP52_10335)	-	2166020..2166697 (-)	678	WP_014939006.1	DedA family protein	-
FIP52_RS10340 (FIP52_10340)	prfB	2166775..2167887 (-)	1113	WP_038693292.1	peptide chain release factor 2	-

Sequence

Protein

• Length: 224 a.a.
• Molecular weight: 25045.78 Da
• Isoelectric Point: 4.9641

>NTDB_id=324467 FIP52_RS10325 WP_014939008.1 2163327..2164001(-) (clpP) [Riemerella anatipestifer strain WJ4]
MDIKKEFRDFSVKHLGNNGLVTDQYMGTFNPTNLTPYIMEERRMNVAQMDVFSRLMMDRIIFLGTGIDDQVANIVTAQLL
FLESADPAKDIQIYINSPGGSVYAGLGIYDTMQIIKPDVATICTGMAASMGAVLLVAGEKGKRSALKHSRVMIHQPSGGA
QGVASDMEINLREMLKLKKELYDIISEHSGQSYEWVEKSSDRDYWMTSEEAKEFGMIDEVLARK

Nucleotide

• Length: 675 bp

>NTDB_id=324467 FIP52_RS10325 WP_014939008.1 2163327..2164001(-) (clpP) [Riemerella anatipestifer strain WJ4]
ATGGATATTAAAAAGGAATTTAGAGATTTTTCGGTAAAGCACCTAGGAAATAATGGACTAGTTACCGACCAATATATGGG
GACTTTTAACCCAACCAACCTTACGCCATACATTATGGAGGAACGCCGTATGAATGTGGCACAAATGGATGTTTTTTCTA
GATTGATGATGGATAGAATCATCTTTTTAGGAACTGGGATAGACGACCAAGTGGCTAATATTGTAACGGCTCAGCTTCTA
TTTTTAGAGAGTGCAGACCCTGCTAAAGACATTCAAATTTACATTAACTCTCCAGGAGGAAGCGTATATGCAGGACTTGG
AATTTATGACACCATGCAAATCATTAAGCCTGATGTAGCTACTATCTGTACTGGTATGGCTGCTTCTATGGGAGCTGTAC
TTCTTGTAGCTGGTGAAAAGGGTAAACGCTCTGCTCTTAAACATTCTAGAGTAATGATACACCAGCCTAGTGGTGGTGCT
CAAGGTGTGGCTAGCGATATGGAAATTAACCTAAGAGAAATGCTTAAACTGAAGAAAGAACTTTATGATATTATCTCTGA
ACATTCTGGACAATCTTATGAATGGGTAGAAAAATCTTCTGATAGAGATTATTGGATGACCTCCGAAGAAGCTAAAGAAT
TCGGAATGATAGACGAAGTTCTAGCTAGAAAATAA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (48-223)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	55.556	84.375	0.469
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.105	84.821	0.442
clpP	Streptococcus pneumoniae D39	46.632	86.161	0.402
clpP	Streptococcus pneumoniae R6	46.632	86.161	0.402
clpP	Streptococcus pneumoniae TIGR4	46.632	86.161	0.402
clpP	Streptococcus pneumoniae Rx1	46.632	86.161	0.402
clpP	Lactococcus lactis subsp. cremoris KW2	46.842	84.821	0.397
clpP	Streptococcus thermophilus LMG 18311	44.56	86.161	0.384
clpP	Streptococcus thermophilus LMD-9	44.56	86.161	0.384
clpP	Streptococcus mutans UA159	45.026	85.268	0.384
clpP	Streptococcus pyogenes MGAS315	44.737	84.821	0.379
clpP	Streptococcus pyogenes JRS4	44.737	84.821	0.379
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.737	84.821	0.379