Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EFV54_RS12400 Genome accession   NZ_CP033607
Coordinates   1096341..1096745 (-) Length   134 a.a.
NCBI ID   WP_003130657.1    Uniprot ID   -
Organism   Lactococcus lactis strain IL1403     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1091341..1101745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFV54_RS05805 (EFV54_05805) - 1091841..1093029 (+) 1189 Protein_1108 Nramp family divalent metal transporter -
  EFV54_RS05810 (EFV54_05810) - 1093131..1094099 (+) 969 WP_003130649.1 PhoH family protein -
  EFV54_RS05815 (EFV54_05815) - 1094157..1094636 (+) 480 WP_003130650.1 NUDIX hydrolase -
  EFV54_RS05820 (EFV54_05820) ybeY 1094788..1095276 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  EFV54_RS05825 (EFV54_05825) - 1095260..1095715 (+) 456 WP_003130653.1 diacylglycerol kinase -
  EFV54_RS05830 (EFV54_05830) - 1095729..1096307 (+) 579 WP_003130655.1 nucleotidyltransferase family protein -
  EFV54_RS12400 comFC 1096341..1096745 (-) 405 WP_003130657.1 ComF family protein Machinery gene
  EFV54_RS05840 (EFV54_05840) comFA 1096988..1098310 (-) 1323 WP_010905751.1 DEAD/DEAH box helicase Machinery gene
  EFV54_RS05845 (EFV54_05845) - 1098367..1098996 (+) 630 WP_021214545.1 YigZ family protein -
  EFV54_RS05850 (EFV54_05850) - 1099130..1099627 (+) 498 WP_003130662.1 VanZ family protein -
  EFV54_RS05855 (EFV54_05855) - 1099675..1100694 (+) 1020 WP_003130663.1 DUF475 domain-containing protein -
  EFV54_RS05860 (EFV54_05860) - 1100804..1101556 (+) 753 WP_010905753.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15735.15 Da        Isoelectric Point: 9.8798

>NTDB_id=324400 EFV54_RS12400 WP_003130657.1 1096341..1096745(-) (comFC) [Lactococcus lactis strain IL1403]
MKDYFSQYKFVGDYRLYQIFEPYFKNISQKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=324400 EFV54_RS12400 WP_003130657.1 1096341..1096745(-) (comFC) [Lactococcus lactis strain IL1403]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAATAT
TTCCCAAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.91

100

0.679
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.194

100

0.41
  comFC Latilactobacillus sakei subsp. sakei 23K

39.231

97.015

0.381

Multiple sequence alignment