Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   FGE23_RS10065 Genome accession   NZ_CP040672
Coordinates   1958313..1961195 (+) Length   960 a.a.
NCBI ID   WP_146276449.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1953313..1966195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS10040 - 1953751..1954518 (+) 768 WP_146276441.1 enoyl-CoA hydratase -
  FGE23_RS10045 - 1954543..1954728 (-) 186 WP_070081577.1 YhzD family protein -
  FGE23_RS10050 - 1954834..1955730 (+) 897 WP_146276443.1 ABC transporter ATP-binding protein -
  FGE23_RS10055 - 1955723..1956982 (+) 1260 WP_146276445.1 ABC transporter permease -
  FGE23_RS10060 - 1957093..1958316 (+) 1224 WP_146276447.1 DNA repair exonuclease -
  FGE23_RS10065 sbcE 1958313..1961195 (+) 2883 WP_146276449.1 AAA family ATPase Machinery gene
  FGE23_RS10070 yhaM 1961269..1962213 (+) 945 WP_003155251.1 3'-5' exoribonuclease YhaM -
  FGE23_RS10075 - 1962328..1962555 (+) 228 WP_025649547.1 sporulation YhaL family protein -
  FGE23_RS10080 - 1962594..1963445 (-) 852 WP_146276451.1 peptidylprolyl isomerase -
  FGE23_RS10085 yhzE1 1963604..1963690 (+) 87 WP_017417375.1 sporulation protein YhzE1 -
  FGE23_RS10090 yhzE2 1963815..1963901 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  FGE23_RS10095 - 1963958..1964176 (-) 219 WP_003155245.1 hypothetical protein -
  FGE23_RS10100 - 1964237..1964767 (-) 531 WP_007409225.1 DUF3267 domain-containing protein -
  FGE23_RS10110 - 1964979..1965320 (+) 342 WP_003155243.1 YhaI family protein -
  FGE23_RS10115 - 1965317..1965928 (-) 612 WP_003155240.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 960 a.a.        Molecular weight: 109604.67 Da        Isoelectric Point: 7.6109

>NTDB_id=323066 FGE23_RS10065 WP_146276449.1 1958313..1961195(+) (sbcE) [Bacillus amyloliquefaciens strain X030]
MKITAMHIYQYGKFSDRSFLLSDSPVQVIYGLNEAGKTTLMSFIKSVLFGFPKSKKYEPKNGGVYGGTVELKHGDHGAVK
IERTKGTAEKVRVYTASGEIKDGEWLKQLLSDTDRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLYSSLFGSEAAAKLDG
RLAKELDRMYKPNGRNPRLNQELDTLKRLSAQLKQAEAAEAGYHSLLEEKKSAGGRLQDAEARLKDITEEIKTVKSAIEA
KPLADKKTALESELSSYPEALKQFPKDGMHQLEKYESHLHPKAARLEGLRAKAAELRRQAELLAPNEDLLQTERQLQELS
GEQHMYESRGEQLAAIQSQIRQTSARVSSGLQQLGRHEEDGILSLNTDYEYEWRLQEAVQSAGQARERKTQLDAIFEQAR
LELEEAERKHALTAENILDPAVRKEKEAALQSYKQTADTEGNEWQAHVQQLEKQRAKQKKLFLGAGILFIAIFAMLKEWL
PAALFTGALLLYMLSGIQKPLPSERGGPGHKKKKPTISKEAADLLQEELWRDGRHRQQLIADQAVLEQKEAAYERVIRQY
EEWEAEMAPSEKQAELFMKELGFSGSPSHLLDAYHVMKDVKKEILNKHELTIEAGRLQKLQRAFEDRVKKLSPSDGRELS
VKERLRVLLAQAERAREEAKRKQALETDLLHAQEQMRELNEEVHYYEQQVKQLFMAAGAKNREHFCELARLNESRRETER
QLREIKTHLSGIGGKQLEPYMSRTVSELEHTVVQKETEKKTLEEKSAQLREKTALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIREKMDRHKKVTLPRLLETAGALYGPLTDGRYHKLYFSEADDSIMVMRKDGTVFSAGELSQ
AACEQLYAAIRFALASERESAVSLPFLLDDSFVHFDKQRLERLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide


Download         Length: 2883 bp        

>NTDB_id=323066 FGE23_RS10065 WP_146276449.1 1958313..1961195(+) (sbcE) [Bacillus amyloliquefaciens strain X030]
ATGAAAATAACGGCGATGCATATTTACCAATACGGAAAATTTTCCGACCGAAGTTTTCTGCTGTCAGATTCTCCCGTGCA
AGTGATCTACGGATTAAATGAAGCGGGCAAAACGACGTTGATGTCCTTTATCAAAAGCGTGCTGTTCGGTTTTCCGAAAT
CAAAAAAATACGAACCGAAAAACGGCGGGGTTTACGGCGGCACTGTGGAATTGAAGCATGGCGATCACGGTGCCGTCAAA
ATCGAACGGACAAAAGGCACTGCCGAAAAAGTCAGAGTGTATACGGCTTCAGGCGAAATCAAGGACGGAGAATGGCTCAA
ACAGCTTCTTTCCGATACAGATCGGGCGCTGTACGAAGCGATCTATTCGTTCGATGTATTCGGACTGCAGGAGATTCAAG
CTTTTAACCGGGACAAAATCGGCGAGTTTCTCCTGTATTCGAGCTTATTCGGGTCGGAAGCGGCGGCAAAGCTTGACGGG
CGGCTGGCAAAAGAACTTGACAGGATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAGTTGGATACATTAAA
GCGGCTCAGCGCCCAGCTGAAACAGGCGGAAGCTGCGGAAGCGGGCTATCACAGCCTTCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCTGAAGCACGATTGAAAGACATAACTGAAGAAATCAAAACAGTAAAATCGGCGATAGAAGCA
AAGCCGCTCGCAGACAAAAAAACAGCCTTGGAAAGCGAACTTTCTTCTTATCCGGAAGCATTGAAGCAATTCCCGAAGGA
CGGGATGCATCAGCTTGAAAAATACGAATCGCATCTCCATCCGAAAGCGGCCCGTCTTGAGGGACTTCGGGCAAAAGCGG
CTGAACTCAGGCGGCAGGCTGAGCTGCTCGCTCCAAATGAGGACTTGCTGCAAACAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTACGAATCGCGCGGTGAACAGCTTGCCGCCATCCAATCACAGATCCGGCAGACATCTGCCCGTGT
TTCGTCAGGATTGCAGCAGCTCGGAAGACATGAGGAAGACGGCATTCTTTCGCTGAACACCGATTATGAATATGAATGGC
GGCTGCAGGAAGCCGTGCAGAGCGCCGGACAGGCAAGAGAAAGAAAGACACAGCTTGATGCGATTTTCGAACAAGCGCGG
CTGGAGCTGGAAGAAGCCGAACGAAAACATGCCTTGACGGCGGAAAACATTTTGGACCCCGCTGTCAGGAAAGAAAAAGA
AGCCGCTTTACAATCATATAAGCAAACAGCTGATACAGAAGGAAACGAATGGCAGGCACATGTACAGCAGCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTGCGGGCATTCTGTTCATTGCGATTTTCGCTATGTTAAAGGAATGGCTG
CCCGCCGCCCTTTTTACCGGCGCTCTGCTGCTGTATATGCTGTCCGGCATACAAAAGCCGCTGCCGTCAGAAAGAGGAGG
GCCCGGACACAAGAAAAAGAAGCCGACGATCTCCAAAGAAGCAGCTGATCTTCTGCAGGAAGAGCTTTGGCGTGACGGCC
GGCACCGGCAGCAGCTGATTGCGGATCAAGCCGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCAATAT
GAAGAATGGGAGGCGGAAATGGCGCCGTCTGAAAAACAGGCGGAACTTTTTATGAAGGAACTGGGGTTTTCAGGAAGTCC
TTCCCATCTTCTTGACGCATATCATGTGATGAAAGATGTCAAAAAAGAAATCCTTAACAAGCATGAGCTGACCATTGAAG
CGGGCCGGCTGCAAAAGCTGCAAAGAGCATTTGAGGACCGGGTCAAAAAGCTGAGTCCTTCAGACGGAAGGGAGCTGTCC
GTAAAAGAAAGACTGCGCGTTTTGCTGGCGCAGGCGGAACGGGCCCGTGAGGAAGCAAAACGAAAGCAGGCGCTCGAAAC
GGATCTGCTGCATGCACAAGAGCAAATGCGTGAATTAAATGAAGAAGTTCATTACTACGAACAGCAGGTCAAACAGCTTT
TCATGGCGGCAGGCGCAAAAAACCGCGAACACTTTTGTGAACTCGCCAGGCTGAATGAAAGCCGCCGGGAAACAGAGCGG
CAGCTGCGCGAAATCAAAACGCACTTGTCCGGCATAGGCGGAAAACAGCTTGAGCCGTATATGAGCCGCACAGTGTCCGA
ACTTGAACATACAGTCGTTCAGAAGGAAACAGAGAAAAAAACGCTTGAGGAAAAAAGCGCGCAGCTCCGTGAGAAAACGG
CTTTATTAACGGTGAAACAAGAGCAGCTGGAGTCCTCGGGACTTGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAG
GAGCGTGTGAAAAAAACCGCTAAAGAGTGGGCCGCATTACAGACGGTCAGACACATCATCAGGGAAAAAATGGATCGGCA
TAAAAAAGTGACGCTTCCCCGTCTGTTAGAAACCGCCGGTGCATTATACGGACCGCTTACGGACGGACGCTACCACAAAT
TGTATTTCTCCGAGGCGGATGATTCCATTATGGTCATGCGGAAAGACGGAACGGTGTTTTCTGCAGGCGAACTCTCACAG
GCGGCATGCGAGCAGCTTTATGCGGCGATCCGTTTCGCCCTTGCGTCAGAGAGGGAATCTGCGGTATCACTTCCGTTTTT
ACTTGATGACAGTTTTGTCCATTTTGACAAGCAGCGGCTGGAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GGCGGCAGATACTTTATTTCACCTGCCATGAGCATGTCAGCCGGTCTTTTCACAGCGGACAAGTCATGCGGCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

56.906

100

0.571

Multiple sequence alignment