Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FGE23_RS09780 Genome accession   NZ_CP040672
Coordinates   1903172..1903819 (+) Length   215 a.a.
NCBI ID   WP_070081558.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1898172..1908819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS09765 glpD 1898341..1900008 (+) 1668 WP_003155341.1 glycerol-3-phosphate dehydrogenase -
  FGE23_RS09770 - 1900148..1901890 (+) 1743 WP_071392057.1 phospho-sugar mutase -
  FGE23_RS09775 - 1902036..1903172 (+) 1137 WP_094247111.1 GAF domain-containing sensor histidine kinase -
  FGE23_RS09780 vraR 1903172..1903819 (+) 648 WP_070081558.1 response regulator transcription factor Regulator
  FGE23_RS09785 - 1903816..1904340 (+) 525 WP_102422642.1 NADPH-dependent FMN reductase -
  FGE23_RS09790 - 1904354..1904596 (-) 243 WP_003155335.1 YhdB family protein -
  FGE23_RS09795 - 1904788..1905111 (+) 324 WP_003155332.1 DUF3889 domain-containing protein -
  FGE23_RS09800 - 1905154..1906608 (-) 1455 WP_071392053.1 peptidoglycan endopeptidase -
  FGE23_RS09805 nsrR 1906787..1907221 (-) 435 WP_007610306.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23999.45 Da        Isoelectric Point: 6.3898

>NTDB_id=323064 FGE23_RS09780 WP_070081558.1 1903172..1903819(+) (vraR) [Bacillus amyloliquefaciens strain X030]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALHQAEKTEPDIILMDLSMPDMDGIEAAKIAAERFPDISIVVL
TSYSDQEHVIPALKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLTHMVQDNQDKEKYYQLTPREKDVLQEI
AKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNVFGKAVKS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=323064 FGE23_RS09780 WP_070081558.1 1903172..1903819(+) (vraR) [Bacillus amyloliquefaciens strain X030]
ATGAAAATTGTGATTGCTGATGATCATCATGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGACATTGA
AGTTGTCGGTGAGGCGTCCACCGGTGCTGAAGCGCTTCATCAAGCTGAAAAGACGGAGCCGGACATCATTCTGATGGATT
TATCAATGCCTGATATGGACGGCATTGAAGCGGCAAAAATTGCGGCTGAACGATTTCCGGACATCAGTATCGTCGTTTTG
ACGAGCTATTCTGATCAGGAGCACGTCATTCCCGCCCTTAAAGCCGGCGCAAAAGCGTATCAGCTGAAAGACGCTCAGCC
CGATGATTTAGTGAAAACGCTCCGGGAAGTGTATTCCGGACGTTACCGGCTGTCGGCGGATATTGTGCCTCACGTGCTGA
CCCATATGGTTCAGGATAATCAGGATAAGGAAAAATATTATCAGCTGACCCCCCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGAAAAAGCAATAAGGAAATTGCGGCGGCCCTGTTTATTTCAGAAAAAACAGTGAAGACCCACGTGTCCAACCT
GCTGTCAAAGCTGAATCTTTCCGACCGGACGCAGGCGGCATTGTATGCGGTAAAATATAATGTTTTTGGAAAGGCGGTAA
AATCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.81

97.674

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.391

Multiple sequence alignment