Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   VS_RS10305 Genome accession   NC_011753
Coordinates   2347941..2348240 (-) Length   99 a.a.
NCBI ID   WP_012604502.1    Uniprot ID   A0A1C3ITZ1
Organism   Vibrio atlanticus     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2342941..2353240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VS_RS10280 (VS_2193) - 2343382..2344614 (+) 1233 WP_009847275.1 pyridoxal phosphate-dependent aminotransferase -
  VS_RS10285 (VS_2195) yfbR 2344784..2345368 (+) 585 WP_009847276.1 5'-deoxynucleotidase -
  VS_RS10290 (VS_2196) - 2345423..2346766 (+) 1344 WP_012604499.1 anti-phage deoxyguanosine triphosphatase -
  VS_RS10295 (VS_2197) - 2346793..2347392 (-) 600 WP_012604500.1 tRNA-uridine aminocarboxypropyltransferase -
  VS_RS10300 (VS_2198) rrtA 2347402..2347944 (+) 543 WP_041472877.1 rhombosortase -
  VS_RS10305 (VS_2199) comEA 2347941..2348240 (-) 300 WP_012604502.1 ComEA family DNA-binding protein Machinery gene
  VS_RS10310 (VS_2200) ppiD 2348462..2350327 (-) 1866 WP_012604503.1 peptidylprolyl isomerase -
  VS_RS10315 (VS_2201) - 2350549..2350842 (-) 294 WP_012604504.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10796.28 Da        Isoelectric Point: 4.4230

>NTDB_id=32280 VS_RS10305 WP_012604502.1 2347941..2348240(-) (comEA) [Vibrio atlanticus]
MRTIYSTLFLTFLILLSPAAYADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTADDLV
SVKGIGEATVKKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=32280 VS_RS10305 WP_012604502.1 2347941..2348240(-) (comEA) [Vibrio atlanticus]
ATGCGCACGATATATTCAACATTATTTCTTACATTTCTGATTCTGTTAAGCCCCGCAGCGTATGCAGACAGCCCAACTAA
GGCAGAGCTTTACGATGGCATTGAGATTACGGTCAATATCAATACCGCGACAGCTGAAGAGCTGTCAGCGCTATTGGTTG
GTGTTGGGGATAAGAAAGCTCAAGAGATCGTCGATTACAGGGATCAAAACGGGGCATTTACGACTGCTGATGATTTGGTG
AGTGTGAAAGGGATAGGTGAAGCGACAGTTAAAAAGAACCGCGAAAGAATTCAACTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3ITZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

54.455

100

0.556
  comEA Vibrio cholerae C6706

54.455

100

0.556
  comEA Vibrio parahaemolyticus RIMD 2210633

60.92

87.879

0.535
  comEA Vibrio campbellii strain DS40M4

59.77

87.879

0.525
  comEA Acinetobacter baumannii strain A118

32.331

100

0.434
  comEA Acinetobacter baylyi ADP1

48.78

82.828

0.404
  comE1/comEA Haemophilus influenzae Rd KW20

35.135

100

0.394

Multiple sequence alignment