Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   D9Y32_RS21050 Genome accession   NZ_CP033218
Coordinates   4028799..4029092 (-) Length   97 a.a.
NCBI ID   WP_003183466.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TCCC 11148     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4023799..4034092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS21005 (D9Y32_21030) tasA 4024182..4024976 (-) 795 WP_142782737.1 biofilm matrix protein TasA -
  D9Y32_RS21010 (D9Y32_21035) sipW 4025050..4025634 (-) 585 WP_003183449.1 signal peptidase I SipW -
  D9Y32_RS21015 (D9Y32_21040) tapA 4025631..4026359 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  D9Y32_RS21020 (D9Y32_21045) - 4026636..4026956 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  D9Y32_RS21025 (D9Y32_21050) - 4026980..4027162 (-) 183 WP_003183456.1 YqzE family protein -
  D9Y32_RS21030 (D9Y32_21055) comGG 4027250..4027615 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  D9Y32_RS21035 (D9Y32_21060) comGF 4027628..4028116 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  D9Y32_RS21040 (D9Y32_21065) comGE 4028025..4028372 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  D9Y32_RS21045 (D9Y32_21070) comGD 4028356..4028793 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  D9Y32_RS21050 (D9Y32_21075) comGC 4028799..4029092 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  D9Y32_RS21055 (D9Y32_21080) comGB 4029106..4030140 (-) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  D9Y32_RS21060 (D9Y32_21085) comGA 4030130..4031194 (-) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  D9Y32_RS21065 (D9Y32_21090) - 4031351..4032190 (-) 840 WP_061576836.1 STAS domain-containing protein -
  D9Y32_RS21075 (D9Y32_21100) - 4032413..4032808 (-) 396 WP_142782738.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  D9Y32_RS21080 (D9Y32_21105) - 4033017..4033262 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  D9Y32_RS21085 (D9Y32_21110) - 4033300..4033938 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 9.1200

>NTDB_id=322756 D9Y32_RS21050 WP_003183466.1 4028799..4029092(-) (comGC) [Bacillus licheniformis strain TCCC 11148]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=322756 D9Y32_RS21050 WP_003183466.1 4028799..4029092(-) (comGC) [Bacillus licheniformis strain TCCC 11148]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCC
GAATGTGACCAAGCATAACCAAAGCATCCAAAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGG
CCTATCAGATGGATCATGACGGGAAAACGCCGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAG
TGTCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

44.211

97.938

0.433
  comGC Staphylococcus aureus N315

44.211

97.938

0.433

Multiple sequence alignment