Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   D9Y32_RS09830 Genome accession   NZ_CP033218
Coordinates   1933894..1934490 (-) Length   198 a.a.
NCBI ID   WP_003185550.1    Uniprot ID   A0A1J6GJE1
Organism   Bacillus licheniformis strain TCCC 11148     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1928894..1939490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS09805 (D9Y32_09815) - 1929550..1930140 (+) 591 WP_003185560.1 carbonic anhydrase -
  D9Y32_RS09810 (D9Y32_09820) - 1930162..1931781 (+) 1620 WP_009329635.1 SulP family inorganic anion transporter -
  D9Y32_RS09815 (D9Y32_09825) - 1931828..1932805 (-) 978 WP_142782358.1 HD domain-containing protein -
  D9Y32_RS09820 (D9Y32_09830) - 1932792..1933127 (-) 336 WP_003185554.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  D9Y32_RS09825 (D9Y32_09835) - 1933239..1933814 (+) 576 WP_003185552.1 TIGR00730 family Rossman fold protein -
  D9Y32_RS09830 (D9Y32_09840) clpP 1933894..1934490 (-) 597 WP_003185550.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  D9Y32_RS09835 (D9Y32_09845) - 1934731..1935048 (+) 318 WP_009329632.1 TM2 domain-containing protein -
  D9Y32_RS09845 (D9Y32_09855) - 1935410..1936399 (+) 990 WP_142782359.1 tyrosine-type recombinase/integrase -
  D9Y32_RS09850 (D9Y32_09860) - 1936557..1937282 (+) 726 WP_142782360.1 helix-turn-helix domain-containing protein -
  D9Y32_RS09860 (D9Y32_09870) - 1937543..1938088 (+) 546 WP_142782361.1 tyrosine-type recombinase/integrase -
  D9Y32_RS09865 (D9Y32_09875) - 1938767..1939033 (-) 267 WP_260677361.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21803.99 Da        Isoelectric Point: 4.7982

>NTDB_id=322718 D9Y32_RS09830 WP_003185550.1 1933894..1934490(-) (clpP) [Bacillus licheniformis strain TCCC 11148]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQ
PLEVIERDTDRDNFKTAEEAKEYGLIDKVLTRNIDAQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=322718 D9Y32_RS09830 WP_003185550.1 1933894..1934490(-) (clpP) [Bacillus licheniformis strain TCCC 11148]
ATGAATTTAATACCTACAGTCATTGAACAGACGAACCGCGGGGAAAGAGCGTATGACATTTACTCACGCTTGTTGAAAGA
CCGTATCATTATGCTGGGATCAGCAATCGATGACAATGTTGCGAACTCCATCGTATCTCAGCTTCTATTCCTTGAAGCCG
AAGATCCAGAAAAAGATATCAGCATCTATATCAACAGCCCTGGCGGCTCCATCACAGCCGGTATGGCGATTTATGACACC
ATGCAGTTTATTAAACCGCAAGTCTCCACGATTTGTACGGGAATGGCGGCATCCATGGGTGCGTTCCTTCTTGCAGCCGG
CGAGAAAGGGAAGCGCTACGCTCTTCCAAACAGTGAAGTCATGATCCACCAGCCGCTTGGCGGAGCGCAGGGTCAGGCGA
CTGAAATTGAAATTGCCGCGAAACGCATTCTTTCATTGCGCGACAAGCTGAACAAAATCCTTGCAGAGCGCACTGGGCAG
CCGCTTGAAGTAATCGAGCGCGATACAGACCGCGACAACTTCAAAACGGCTGAAGAAGCAAAAGAATACGGCCTGATTGA
TAAAGTGCTTACACGCAATATCGACGCACAGAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J6GJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.386

99.495

0.919
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.229

96.97

0.662
  clpP Streptococcus thermophilus LMG 18311

58.031

97.475

0.566
  clpP Streptococcus thermophilus LMD-9

58.031

97.475

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

56.995

97.475

0.556
  clpP Streptococcus pneumoniae Rx1

56.995

97.475

0.556
  clpP Streptococcus pneumoniae D39

56.995

97.475

0.556
  clpP Streptococcus pneumoniae R6

56.995

97.475

0.556
  clpP Streptococcus pneumoniae TIGR4

56.995

97.475

0.556
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.922

97.475

0.535

Multiple sequence alignment