Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   D2B33_RS01230 Genome accession   NZ_CP033198
Coordinates   244941..245537 (-) Length   198 a.a.
NCBI ID   WP_003185550.1    Uniprot ID   A0A1J6GJE1
Organism   Bacillus paralicheniformis strain FA6     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 239941..250537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2B33_RS01205 (D2B33_01210) - 240614..241213 (+) 600 WP_020453050.1 carbonic anhydrase -
  D2B33_RS01210 (D2B33_01215) - 241214..242833 (+) 1620 WP_020453049.1 SulP family inorganic anion transporter -
  D2B33_RS01215 (D2B33_01220) - 242881..243858 (-) 978 WP_020453048.1 HD domain-containing protein -
  D2B33_RS01220 (D2B33_01225) - 243845..244180 (-) 336 WP_020453047.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  D2B33_RS01225 (D2B33_01230) - 244291..244866 (+) 576 WP_023856348.1 TIGR00730 family Rossman fold protein -
  D2B33_RS01230 (D2B33_01235) clpP 244941..245537 (-) 597 WP_003185550.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  D2B33_RS22525 - 245824..245940 (+) 117 WP_224067385.1 NINE protein -
  D2B33_RS22310 - 246288..246440 (+) 153 WP_164468296.1 hypothetical protein -
  D2B33_RS01245 (D2B33_01250) - 246505..248052 (-) 1548 WP_020453045.1 glycoside hydrolase family 32 protein -
  D2B33_RS01250 (D2B33_01255) - 248132..249577 (-) 1446 WP_020453044.1 glycoside hydrolase family 68 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21803.99 Da        Isoelectric Point: 4.7982

>NTDB_id=322418 D2B33_RS01230 WP_003185550.1 244941..245537(-) (clpP) [Bacillus paralicheniformis strain FA6]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQ
PLEVIERDTDRDNFKTAEEAKEYGLIDKVLTRNIDAQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=322418 D2B33_RS01230 WP_003185550.1 244941..245537(-) (clpP) [Bacillus paralicheniformis strain FA6]
ATGAATTTAATACCTACAGTCATTGAACAGACGAACCGCGGGGAAAGAGCGTATGACATTTACTCACGCTTGTTGAAAGA
CCGTATCATTATGCTGGGATCAGCAATCGATGACAATGTTGCGAACTCCATCGTATCTCAGCTTCTATTCCTTGAAGCCG
AAGATCCAGAAAAAGATATCAGCATCTATATTAACAGCCCTGGCGGCTCTATCACAGCCGGCATGGCGATTTATGACACC
ATGCAGTTCATTAAACCTCAAGTCTCTACGATTTGTACGGGAATGGCGGCATCTATGGGTGCGTTCCTTCTCGCAGCCGG
CGAGAAAGGGAAGCGCTACGCTCTTCCAAACAGTGAAGTCATGATCCACCAGCCGCTTGGCGGAGCGCAAGGTCAGGCAA
CAGAAATCGAAATTGCCGCGAAGCGCATTCTTTCATTGCGTGACAAACTGAACAAAATTCTTGCAGAGCGCACTGGACAA
CCGCTTGAAGTGATCGAGCGCGATACAGACCGTGACAACTTCAAAACGGCTGAAGAAGCAAAAGAATACGGCCTGATTGA
TAAAGTGCTCACACGCAATATCGACGCACAGAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J6GJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.386

99.495

0.919
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.229

96.97

0.662
  clpP Streptococcus thermophilus LMG 18311

58.031

97.475

0.566
  clpP Streptococcus thermophilus LMD-9

58.031

97.475

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

56.995

97.475

0.556
  clpP Streptococcus pneumoniae Rx1

56.995

97.475

0.556
  clpP Streptococcus pneumoniae D39

56.995

97.475

0.556
  clpP Streptococcus pneumoniae R6

56.995

97.475

0.556
  clpP Streptococcus pneumoniae TIGR4

56.995

97.475

0.556
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.922

97.475

0.535

Multiple sequence alignment