Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   D2B33_RS00270 Genome accession   NZ_CP033198
Coordinates   53881..54453 (+) Length   190 a.a.
NCBI ID   WP_020453223.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain FA6     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 48881..59453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2B33_RS00245 (D2B33_00245) cls 49370..50818 (-) 1449 WP_041817474.1 cardiolipin synthase -
  D2B33_RS00250 (D2B33_00250) - 51066..51509 (+) 444 WP_020453227.1 YwnF family protein -
  D2B33_RS00255 (D2B33_00255) - 51560..52057 (-) 498 WP_020453226.1 GNAT family N-acetyltransferase -
  D2B33_RS00260 (D2B33_00260) - 52251..53126 (+) 876 WP_020453225.1 M23 family metallopeptidase -
  D2B33_RS00265 (D2B33_00265) - 53262..53867 (+) 606 WP_020453224.1 RNA polymerase sigma factor -
  D2B33_RS00270 (D2B33_00270) clpP 53881..54453 (+) 573 WP_020453223.1 ATP-dependent Clp protease proteolytic subunit Regulator
  D2B33_RS00275 (D2B33_00275) - 54945..55328 (-) 384 WP_020453222.1 hypothetical protein -
  D2B33_RS00280 (D2B33_00280) - 55552..55902 (-) 351 WP_003185936.1 P-II family nitrogen regulator -
  D2B33_RS00285 (D2B33_00285) - 55921..56947 (-) 1027 Protein_55 ammonium transporter -
  D2B33_RS00290 (D2B33_00290) - 57096..58394 (-) 1299 WP_041817345.1 hemolysin family protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21023.10 Da        Isoelectric Point: 4.9212

>NTDB_id=322412 D2B33_RS00270 WP_020453223.1 53881..54453(+) (clpP) [Bacillus paralicheniformis strain FA6]
MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDISIYINSPGGSTSAGYAILDT
MDYVNPDVRTICVGMAASMGAILLAGGTKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLREKIEHFFNERTGQ
PIEKLKADMERDYFMDADEAKAYGVIDAVL

Nucleotide


Download         Length: 573 bp        

>NTDB_id=322412 D2B33_RS00270 WP_020453223.1 53881..54453(+) (clpP) [Bacillus paralicheniformis strain FA6]
ATGAACACCATACCTTACGTCATTGAGAAAACGGCTGCCGGTGAAAGATCGTACGATATTTTTTCCAGACTTTTAAAAGA
CCGGATCATTATGATCGGCTCTGAATTCAACGATGACCTCGCCAATCGGGTCACCGCCCAGTTGCTGTTTTTGTCAGCCG
AAGACAATGAAAAAGACATTTCGATCTATATCAACAGCCCGGGCGGATCAACTTCCGCGGGATATGCGATTTTGGATACG
ATGGACTATGTGAACCCGGATGTCCGCACGATCTGCGTCGGAATGGCAGCTTCCATGGGAGCGATTCTCCTCGCCGGCGG
AACAAAAGGCAAACGGTATGCGCTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA
CAGACATGGAGATTTCAGCGAAGCGGATCATCAAACTGAGGGAAAAAATCGAGCACTTTTTTAACGAACGAACGGGCCAG
CCCATTGAAAAACTAAAAGCCGACATGGAACGTGATTATTTTATGGATGCGGACGAAGCGAAGGCATACGGTGTGATTGA
CGCTGTTTTGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

64.737

100

0.647
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.497

98.421

0.605
  clpP Streptococcus thermophilus LMG 18311

55.556

99.474

0.553
  clpP Streptococcus thermophilus LMD-9

55.556

99.474

0.553
  clpP Streptococcus pyogenes MGAS315

54.497

99.474

0.542
  clpP Streptococcus pyogenes JRS4

54.497

99.474

0.542
  clpP Streptococcus pneumoniae D39

54.497

99.474

0.542
  clpP Streptococcus pneumoniae R6

54.497

99.474

0.542
  clpP Streptococcus pneumoniae TIGR4

54.497

99.474

0.542
  clpP Streptococcus pneumoniae Rx1

54.497

99.474

0.542
  clpP Streptococcus mutans UA159

53.968

99.474

0.537
  clpP Lactococcus lactis subsp. cremoris KW2

52.381

99.474

0.521
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.323

99.474

0.511

Multiple sequence alignment