Detailed information NTG0322252

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: EBA25_RS08255
• Genome accession: NZ_CP033188
• Coordinates: 1614653..1615912 (-)
• Length: 419 a.a.
• NCBI ID: WP_011408067.1
• Uniprot ID: A0A0K0GIM7
• Organism: Xanthomonas oryzae pv. oryzae strain PXO513
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1599483..1620551	1614653..1615912	within	0

Gene organization within MGE regions

Location: 1599483..1620551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EBA25_RS25150	-	1599483..1601120 (+)	1638	WP_243739232.1	hypothetical protein	-
EBA25_RS25155	-	1601210..1603972 (+)	2763	WP_243739233.1	RHS repeat-associated core domain-containing protein	-
EBA25_RS08175	-	1603972..1604460 (+)	489	WP_128415435.1	DUF6714 family protein	-
EBA25_RS08180 (EBA25_08165)	-	1604512..1605480 (+)	969	WP_011258802.1	IS5-like element ISXo1 family transposase	-
EBA25_RS08185	-	1605629..1605928 (+)	300	WP_125168747.1	hypothetical protein	-
EBA25_RS08190	-	1605925..1606254 (+)	330	WP_125168748.1	hypothetical protein	-
EBA25_RS08195 (EBA25_08170)	-	1606331..1607764 (+)	1434	Protein_1473	RHS repeat-associated core domain-containing protein	-
EBA25_RS08200 (EBA25_08175)	-	1607770..1608138 (+)	369	WP_133260527.1	DUF6869 domain-containing protein	-
EBA25_RS08205 (EBA25_08180)	-	1608308..1609276 (-)	969	WP_011409545.1	IS5-like element ISXo1 family transposase	-
EBA25_RS08210 (EBA25_08185)	-	1609372..1609539 (+)	168	Protein_1476	IS701 family transposase	-
EBA25_RS08220 (EBA25_08195)	-	1609657..1609878 (+)	222	Protein_1477	IS4 family transposase	-
EBA25_RS08225 (EBA25_08200)	-	1609968..1610924 (+)	957	WP_041182041.1	IS30-like element IS1112a family transposase	-
EBA25_RS08230 (EBA25_08205)	-	1610908..1611210 (+)	303	WP_158645227.1	hypothetical protein	-
EBA25_RS08240 (EBA25_08215)	-	1611771..1613090 (-)	1320	WP_133260528.1	IS701-like element ISXo15 family transposase	-
EBA25_RS08245 (EBA25_08220)	coaE	1613161..1613769 (-)	609	WP_011258357.1	dephospho-CoA kinase	-
EBA25_RS08250 (EBA25_08225)	-	1613783..1614646 (-)	864	WP_011258358.1	A24 family peptidase	-
EBA25_RS08255 (EBA25_08230)	pilC	1614653..1615912 (-)	1260	WP_011408067.1	type II secretion system F family protein	Machinery gene
EBA25_RS08260 (EBA25_08235)	pilA2	1616267..1616692 (+)	426	WP_011408068.1	pilin	Machinery gene
EBA25_RS08265 (EBA25_08240)	-	1616827..1618416 (+)	1590	WP_011408069.1	phosphoethanolamine transferase	-
EBA25_RS08270 (EBA25_08245)	-	1618427..1619056 (+)	630	WP_011408070.1	hypothetical protein	-
EBA25_RS25765 (EBA25_08250)	-	1619026..1620551 (+)	1526	Protein_1487	hypothetical protein	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46058.56 Da
• Isoelectric Point: 10.2301

>NTDB_id=322252 EBA25_RS08255 WP_011408067.1 1614653..1615912(-) (pilC) [Xanthomonas oryzae pv. oryzae strain PXO513]
MSVARSAIKKQPVDRNTSMLQTFIWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGGAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLIVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=322252 EBA25_RS08255 WP_011408067.1 1614653..1615912(-) (pilC) [Xanthomonas oryzae pv. oryzae strain PXO513]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCATGCTGCAGACCTTCATTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGGGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTACCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCTCTGAAGGGCAAGATCAAAAAGGCACTGTTCTACCC
TGCCATGGTGGTTGCAGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATAGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGAGGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

3D structure

• AlphaFold DB: A0A0K0GIM7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	53.202	96.897	0.516
pilC	Pseudomonas stutzeri DSM 10701	53.283	94.511	0.504
pilC	Acinetobacter baylyi ADP1	50.37	96.659	0.487
pilC	Acinetobacter baumannii D1279779	50.37	96.659	0.487
pilG	Neisseria gonorrhoeae MS11	43.921	96.181	0.422
pilG	Neisseria meningitidis 44/76-A	43.424	96.181	0.418
pilC	Vibrio cholerae strain A1552	40.75	95.465	0.389
pilC	Vibrio campbellii strain DS40M4	39	95.465	0.372