Detailed information NTG0318440

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: CFBP5499_RS05455
• Genome accession: NZ_CP039888
• Coordinates: 1031939..1032571 (+)
• Length: 210 a.a.
• NCBI ID: WP_003502355.1
• Uniprot ID: -
• Organism: Agrobacterium tumefaciens strain CFBP5499
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1026939..1037571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFBP5499_RS05435 (CFBP5499_05435)	-	1027227..1028510 (+)	1284	WP_080825284.1	O-acetylhomoserine aminocarboxypropyltransferase	-
CFBP5499_RS05440 (CFBP5499_05440)	-	1028524..1028868 (+)	345	WP_080825283.1	cupin domain-containing protein	-
CFBP5499_RS05445 (CFBP5499_05445)	-	1028907..1030154 (-)	1248	WP_080825282.1	cytochrome P450	-
CFBP5499_RS05450 (CFBP5499_05450)	-	1030242..1031489 (-)	1248	WP_080825281.1	GGDEF domain-containing protein	-
CFBP5499_RS05455 (CFBP5499_05455)	clpP	1031939..1032571 (+)	633	WP_003502355.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
CFBP5499_RS05460 (CFBP5499_05460)	clpX	1032861..1034138 (+)	1278	WP_003496489.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
CFBP5499_RS05470 (CFBP5499_05470)	lon	1034553..1036970 (+)	2418	WP_137066250.1	endopeptidase La	-
CFBP5499_RS05475 (CFBP5499_05475)	hupB	1037259..1037534 (+)	276	WP_006312721.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 210 a.a.
• Molecular weight: 23268.82 Da
• Isoelectric Point: 6.1215

>NTDB_id=318440 CFBP5499_RS05455 WP_003502355.1 1031939..1032571(+) (clpP) [Agrobacterium tumefaciens strain CFBP5499]
MKNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIALYINSPGGVVT
AGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNE
VYVKHTGRTLEEVEKTLDRDHFMDADEAKEWGVIDKILTSRQEIEGAAAN

Nucleotide

• Length: 633 bp

>NTDB_id=318440 CFBP5499_RS05455 WP_003502355.1 1031939..1032571(+) (clpP) [Agrobacterium tumefaciens strain CFBP5499]
ATGAAAAATCCAGTTGATACCGCCATGGCTCTGGTGCCGATGGTCGTTGAGCAGACCAATCGCGGCGAACGCTCCTACGA
CATATTTTCCCGTCTTCTCAAGGAACGCATCATTTTCCTCACCGGCCCGGTGGAAGACCAGATGGCGTCGCTCGTCTGCG
CGCAGCTCCTTTTCCTCGAGGCTGAAAACCCGAAGAAGGAAATCGCGCTCTACATCAATTCGCCGGGTGGCGTCGTGACC
GCCGGCATGGCGATCTACGATACGATGCAGTTCATTCGCCCCGCGGTTTCGACGCTCTGCGTCGGCCAGGCGGCATCCAT
GGGCTCGCTGCTTCTGGCTGCCGGCGAAAAGGGTATGCGTTTCGCCACCCCGAATGCCCGCATCATGGTGCATCAGCCTT
CCGGCGGCTTCCAGGGCCAGGCATCGGATATCGAGCGCCACGCCCGCGACATCATCAAGATGAAGCGCCGCCTGAATGAA
GTCTACGTCAAGCATACCGGCCGCACGCTTGAAGAGGTTGAAAAAACCCTTGATCGCGACCATTTCATGGATGCAGACGA
GGCGAAGGAATGGGGTGTGATCGACAAGATCCTGACCTCACGCCAGGAAATCGAAGGCGCCGCCGCGAATTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (21-200)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	60.513	92.857	0.562
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.447	89.524	0.514
clpP	Lactococcus lactis subsp. cremoris KW2	52.632	90.476	0.476
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.053	90.476	0.462
clpP	Streptococcus mutans UA159	49.231	92.857	0.457
clpP	Streptococcus pneumoniae TIGR4	49.223	91.905	0.452
clpP	Streptococcus pneumoniae Rx1	49.223	91.905	0.452
clpP	Streptococcus pneumoniae D39	49.223	91.905	0.452
clpP	Streptococcus pneumoniae R6	49.223	91.905	0.452
clpP	Streptococcus pyogenes JRS4	48.969	92.381	0.452
clpP	Streptococcus pyogenes MGAS315	48.969	92.381	0.452
clpP	Streptococcus thermophilus LMG 18311	48.969	92.381	0.452
clpP	Streptococcus thermophilus LMD-9	48.969	92.381	0.452