Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   D7I46_RS10050 Genome accession   NZ_CP032627
Coordinates   2131938..2132225 (-) Length   95 a.a.
NCBI ID   WP_223804698.1    Uniprot ID   -
Organism   Lactococcus allomyrinae strain 1JSPR-7     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2126938..2137225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7I46_RS10050 (D7I46_10050) comX 2131938..2132225 (-) 288 WP_223804698.1 hypothetical protein Regulator
  D7I46_RS10055 (D7I46_10055) dnaA 2132614..2133981 (+) 1368 WP_120772761.1 chromosomal replication initiator protein DnaA -
  D7I46_RS10060 (D7I46_10060) dnaN 2134137..2135279 (+) 1143 WP_120772762.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11259.71 Da        Isoelectric Point: 4.7876

>NTDB_id=317324 D7I46_RS10050 WP_223804698.1 2131938..2132225(-) (comX) [Lactococcus allomyrinae strain 1JSPR-7]
MIDEIRHSQAKKRGFDQLGAVDIYEYSDVISSHGETPESALVFNHLLAEVYECLRPHYQELLVRQMRGEELTRMERYRLK
EKIKSILFDLDDSEE

Nucleotide


Download         Length: 288 bp        

>NTDB_id=317324 D7I46_RS10050 WP_223804698.1 2131938..2132225(-) (comX) [Lactococcus allomyrinae strain 1JSPR-7]
TTGATAGATGAAATCCGTCATAGTCAAGCGAAAAAACGAGGCTTTGACCAATTAGGAGCGGTAGATATCTATGAGTATTC
GGATGTCATTTCGTCACACGGAGAGACCCCGGAAAGTGCACTTGTATTTAATCACCTTCTAGCAGAGGTGTATGAGTGCC
TTCGTCCTCATTACCAAGAACTTCTCGTTCGCCAAATGCGAGGCGAAGAACTGACACGTATGGAGCGCTATCGGCTCAAA
GAAAAAATTAAATCTATTCTTTTTGATTTAGATGACTCGGAAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

72.826

96.842

0.705
  comX Lactococcus lactis subsp. lactis strain DGCC12653

63.043

96.842

0.611

Multiple sequence alignment