Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   D7D53_RS07530 Genome accession   NZ_CP032621
Coordinates   1513268..1515256 (-) Length   662 a.a.
NCBI ID   WP_120770608.1    Uniprot ID   -
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508268..1520256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS07510 (D7D53_07510) amiF 1508766..1509692 (-) 927 WP_001291285.1 ATP-binding cassette domain-containing protein Regulator
  D7D53_RS07515 (D7D53_07515) amiE 1509703..1510770 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  D7D53_RS07520 (D7D53_07520) amiD 1510779..1511705 (-) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  D7D53_RS07525 (D7D53_07525) amiC 1511705..1513201 (-) 1497 WP_000759916.1 ABC transporter permease Regulator
  D7D53_RS07530 (D7D53_07530) amiA3 1513268..1515256 (-) 1989 WP_120770608.1 peptide ABC transporter substrate-binding protein Regulator
  D7D53_RS07545 (D7D53_07545) - 1515788..1517119 (-) 1332 WP_042750034.1 hemolysin family protein -
  D7D53_RS07550 (D7D53_07550) endA 1517387..1518211 (-) 825 WP_120770609.1 DNA-entry nuclease EndA Machinery gene
  D7D53_RS07555 (D7D53_07555) - 1518250..1518438 (-) 189 WP_004241151.1 DNA-directed RNA polymerase subunit beta -
  D7D53_RS07560 (D7D53_07560) murA 1518431..1519714 (-) 1284 WP_120770610.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72473.81 Da        Isoelectric Point: 4.9319

>NTDB_id=317206 D7D53_RS07530 WP_120770608.1 1513268..1515256(-) (amiA3) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MKKSQVLAVAGATLLASGVLAACSNTSSNNAKLAKDYQYVYQTDPETLDYIVSNIDSTSFVTTNAVDGLLANDKYGNLVP
SIAESWTVSKDGLTYTYKIRKDAKWVTAEGEEYAPVTAKDFVTGLKHAVDGKSKGLSIVSSSIKGLEAYIKGETSDFSTV
GVKALDDQTLEYTLNQPETFWNDKTTSGVLMPVNEEFLTSKGEGFGAPTDANSILYNGPFVLKSVTPKSSIEMAKNDAYW
DKENVKIENVKFTFWDGKDQDVIAKGFADGQYSKARIFPTSSTYEKYAADFKDNIYFNEPGAGVATVSLNYGRTTYNHTA
KTSDAQKTSTQKALLNKEFRQALNFAVDRASYSAQTNGTDGAAVAIRNTFAPYNLQVGKKTFGELVQESLAKTNSSTWSN
VSLADSQNGLYNEEKAKEAFAKAKSSLQAEGVEFPIHLDALVIQESTAVVNRVQSLKQSIEKVLGSDNVVVDLQQMTQAE
ALPISFSAPTAKEQDWDIHTLLGWNPDYQDPSTFLDQFVLKGGSTRLYLGIDQNTDASVVSKLGLADYGKLLDDANSENQ
DVQKRYEKYAVAQAWLTDNALTIPVMASPKETAVSYVSKVLPFSSSYSVAGLKGENSGYLKYTEVGEKAITKEEYEKARE
KWLKEKTESNEKAQKELASHVK

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=317206 D7D53_RS07530 WP_120770608.1 1513268..1515256(-) (amiA3) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATGAAAAAAAGTCAAGTGCTTGCTGTAGCGGGAGCTACCTTATTAGCGTCAGGAGTTCTAGCTGCGTGTTCAAACACTAG
TTCAAATAATGCTAAACTAGCAAAAGATTACCAATATGTTTATCAAACAGATCCAGAAACTTTGGATTATATCGTCAGCA
ATATCGATTCAACATCATTCGTCACAACAAATGCTGTAGATGGTTTGTTGGCTAATGATAAATATGGTAACCTGGTTCCT
TCTATTGCTGAATCATGGACAGTTTCAAAAGATGGTTTGACTTATACCTATAAAATCCGTAAGGATGCTAAATGGGTTAC
AGCAGAGGGAGAAGAATACGCTCCTGTAACTGCTAAAGACTTTGTTACTGGTTTGAAACACGCCGTAGATGGAAAATCAA
AAGGACTTTCAATCGTTAGCTCTTCTATTAAGGGATTAGAAGCCTATATCAAGGGTGAAACAAGCGATTTTTCAACCGTT
GGAGTAAAAGCGCTTGATGATCAAACACTAGAATATACCTTGAACCAGCCAGAAACTTTCTGGAATGACAAGACCACTAG
TGGTGTTTTGATGCCGGTTAATGAAGAATTCTTAACTTCAAAAGGGGAAGGTTTTGGTGCCCCAACAGATGCTAACTCTA
TTCTTTATAACGGTCCATTTGTCTTAAAATCTGTAACTCCAAAATCGTCTATCGAGATGGCTAAAAATGATGCTTACTGG
GACAAAGAAAATGTAAAAATTGAGAACGTTAAGTTCACTTTCTGGGATGGTAAGGACCAAGATGTCATTGCCAAAGGTTT
TGCTGATGGTCAATATAGCAAGGCGCGTATCTTCCCTACAAGTTCTACATATGAAAAATATGCAGCTGACTTCAAAGATA
ACATTTACTTTAATGAACCAGGAGCGGGTGTTGCAACTGTCAGCTTGAACTATGGCCGTACAACCTATAATCACACTGCC
AAAACAAGTGATGCCCAAAAGACATCTACTCAGAAAGCATTGCTAAACAAGGAATTCCGTCAAGCCTTGAACTTTGCTGT
CGATCGTGCTTCTTATTCAGCTCAAACAAATGGTACTGATGGAGCTGCAGTAGCCATCCGTAATACGTTTGCACCTTATA
ATCTTCAAGTTGGTAAGAAAACATTTGGTGAGTTGGTACAAGAAAGCTTGGCTAAGACAAATTCTTCTACTTGGTCAAAC
GTGTCTCTAGCTGATTCTCAAAATGGCCTTTACAATGAAGAAAAAGCGAAGGAGGCCTTTGCTAAAGCTAAATCAAGCCT
ACAAGCTGAAGGTGTTGAATTTCCAATCCACTTGGATGCCTTGGTTATCCAAGAATCAACAGCGGTTGTAAACCGTGTTC
AATCATTGAAACAATCAATTGAAAAAGTATTGGGTTCAGATAATGTTGTTGTAGACTTACAACAAATGACTCAAGCAGAA
GCTTTACCAATTTCATTTAGCGCTCCAACAGCTAAAGAACAAGACTGGGATATCCATACCTTGCTAGGATGGAACCCTGA
CTATCAAGATCCTTCTACTTTCTTGGATCAATTCGTCCTTAAGGGAGGAAGCACTCGTCTCTACCTTGGTATTGACCAAA
ACACAGATGCATCAGTAGTAAGCAAACTTGGTTTAGCTGACTATGGAAAATTACTTGATGACGCAAACAGCGAAAACCAA
GATGTTCAAAAACGTTATGAAAAATACGCGGTGGCACAAGCTTGGTTGACTGATAATGCTTTGACAATTCCAGTAATGGC
TTCTCCTAAAGAAACAGCCGTTTCATATGTTTCAAAAGTTCTACCATTTAGCTCTTCATATTCAGTAGCCGGCCTTAAAG
GTGAAAATTCAGGATACTTGAAGTACACTGAAGTTGGTGAAAAAGCAATCACCAAAGAAGAGTATGAAAAAGCTCGTGAA
AAATGGTTGAAAGAAAAGACTGAGTCAAACGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.97

100

0.551
  amiA3 Streptococcus thermophilus LMG 18311

54.669

100

0.548
  amiA Streptococcus salivarius strain HSISS4

54.066

100

0.542

Multiple sequence alignment