Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   D7D53_RS07520 Genome accession   NZ_CP032621
Coordinates   1510779..1511705 (-) Length   308 a.a.
NCBI ID   WP_000103691.1    Uniprot ID   A0A3R9MHI7
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1505779..1516705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS07500 (D7D53_07500) - 1506431..1507324 (-) 894 WP_120770606.1 ABC transporter permease -
  D7D53_RS07505 (D7D53_07505) - 1507336..1508313 (-) 978 WP_120770607.1 ABC transporter substrate-binding protein -
  D7D53_RS07510 (D7D53_07510) amiF 1508766..1509692 (-) 927 WP_001291285.1 ATP-binding cassette domain-containing protein Regulator
  D7D53_RS07515 (D7D53_07515) amiE 1509703..1510770 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  D7D53_RS07520 (D7D53_07520) amiD 1510779..1511705 (-) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  D7D53_RS07525 (D7D53_07525) amiC 1511705..1513201 (-) 1497 WP_000759916.1 ABC transporter permease Regulator
  D7D53_RS07530 (D7D53_07530) amiA3 1513268..1515256 (-) 1989 WP_120770608.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34541.57 Da        Isoelectric Point: 9.6860

>NTDB_id=317204 D7D53_RS07520 WP_000103691.1 1510779..1511705(-) (amiD) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MSTIDKEKFQFVKRDDFASEAIDAPAYSYWGSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=317204 D7D53_RS07520 WP_000103691.1 1510779..1511705(-) (amiD) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAGCCATTGATGCGCCAGCTTA
TTCATACTGGGGTTCAGTGTTTAGACAATTTATGAAGAAGAAATCAACGGTAGTCATGTTGGGAATCTTGGTAGCTATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAATGACTTTAGTGCTCGT
TATATCAAACCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTTTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTCTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGTGTGATGATGGAAGTTTATAACGTCATCTCAAACATTCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTCGCCATGAGTGTGACAACATGGATTGGAATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGTTATCGTGATTTGGAATACAATTTGGCGTCACGTACCTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAACATCATGCCACAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCATTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCAGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTATCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9MHI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment