Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   D7D53_RS07510 Genome accession   NZ_CP032621
Coordinates   1508766..1509692 (-) Length   308 a.a.
NCBI ID   WP_001291285.1    Uniprot ID   F9HA99
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503766..1514692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS07490 (D7D53_07490) - 1504132..1505571 (+) 1440 WP_120770605.1 TrkH family potassium uptake protein -
  D7D53_RS07495 (D7D53_07495) - 1505615..1506418 (-) 804 WP_115259382.1 ABC transporter ATP-binding protein -
  D7D53_RS07500 (D7D53_07500) - 1506431..1507324 (-) 894 WP_120770606.1 ABC transporter permease -
  D7D53_RS07505 (D7D53_07505) - 1507336..1508313 (-) 978 WP_120770607.1 ABC transporter substrate-binding protein -
  D7D53_RS07510 (D7D53_07510) amiF 1508766..1509692 (-) 927 WP_001291285.1 ATP-binding cassette domain-containing protein Regulator
  D7D53_RS07515 (D7D53_07515) amiE 1509703..1510770 (-) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  D7D53_RS07520 (D7D53_07520) amiD 1510779..1511705 (-) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  D7D53_RS07525 (D7D53_07525) amiC 1511705..1513201 (-) 1497 WP_000759916.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34805.77 Da        Isoelectric Point: 6.1125

>NTDB_id=317202 D7D53_RS07510 WP_001291285.1 1508766..1509692(-) (amiF) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=317202 D7D53_RS07510 WP_001291285.1 1508766..1509692(-) (amiF) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACATTCTCGCTTGTTGGTGAGTCAGGTAGTGGGAAAACAACTATTGGTCGTG
CCATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGTATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCATCATCTGTTCAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTTATGCAACCAGACTTTGTTATTGCGGATGAGCCCATTTCAGCCTTGGACGTTTCTGTTCGTGC
TCAAGTCTTAAACTTGCTCAAAAAATTCCAAAAAGAACTTGGCTTGACCTATCTCTTTATCGCCCATGACTTGTCGGTTG
TTCGTTTTATTTCAGATCGTATCGCGGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCATCCATATACTCAGGCTTTGCTTTCAGCGGTACCTATCCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTATATGATCCAGATCAACATGATTATGAGACAGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCCGAATTAGCGCGTTATCAACAAGGGTTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9HA99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment