Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   D7D53_RS07550 Genome accession   NZ_CP032621
Coordinates   1517387..1518211 (-) Length   274 a.a.
NCBI ID   WP_120770609.1    Uniprot ID   -
Organism   Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1512387..1523211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7D53_RS07530 (D7D53_07530) amiA3 1513268..1515256 (-) 1989 WP_120770608.1 peptide ABC transporter substrate-binding protein Regulator
  D7D53_RS07545 (D7D53_07545) - 1515788..1517119 (-) 1332 WP_042750034.1 hemolysin family protein -
  D7D53_RS07550 (D7D53_07550) endA 1517387..1518211 (-) 825 WP_120770609.1 DNA-entry nuclease EndA Machinery gene
  D7D53_RS07555 (D7D53_07555) - 1518250..1518438 (-) 189 WP_004241151.1 DNA-directed RNA polymerase subunit beta -
  D7D53_RS07560 (D7D53_07560) murA 1518431..1519714 (-) 1284 WP_120770610.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  D7D53_RS07565 (D7D53_07565) - 1519726..1520769 (-) 1044 WP_004260556.1 acyltransferase family protein -
  D7D53_RS07570 (D7D53_07570) - 1520831..1521061 (-) 231 WP_004260552.1 DUF1146 family protein -
  D7D53_RS07575 (D7D53_07575) sepM 1521119..1522156 (-) 1038 WP_120770611.1 SepM family pheromone-processing serine protease Regulator
  D7D53_RS07580 (D7D53_07580) coaD 1522140..1522628 (-) 489 WP_120770612.1 pantetheine-phosphate adenylyltransferase -
  D7D53_RS07585 (D7D53_07585) rsmD 1522618..1523157 (-) 540 WP_120770613.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 274 a.a.        Molecular weight: 29866.52 Da        Isoelectric Point: 9.9431

>NTDB_id=317207 D7D53_RS07550 WP_120770609.1 1517387..1518211(-) (endA) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
MDKKTRQTLIGLLVLLLLSAGSYYIKQMQSTANSPKTKVSQKKQASEAPSQALAESVLTDAVKSQIKGSLEWNGSGAFIV
NGNKTNLDAKVSSKPYADNKTKTVGKETVPTVANALLSKATRQYKNREETGNGSTSWTPPGWHQVKNLKGSYTHAVDRGH
LLGYALIGGLDGFDASTSNPKNIAVQTAWANQAQAEDSTGQNYYESMVRKALDKNKRVRYRVTLYYATNEDLVPSASQIE
AKSSDGELEFNVLVPNVQKGLQLDYRTGEVTVTQ

Nucleotide


Download         Length: 825 bp        

>NTDB_id=317207 D7D53_RS07550 WP_120770609.1 1517387..1518211(-) (endA) [Streptococcus gwangjuensis strain KCOM 1679 (=ChDC B345)]
ATGGATAAAAAAACAAGACAGACACTGATCGGCCTGCTAGTGTTATTACTTTTATCTGCGGGAAGCTATTATATCAAGCA
GATGCAGTCGACAGCTAATAGTCCTAAAACAAAGGTTAGTCAGAAAAAACAAGCGTCTGAAGCTCCTAGTCAAGCATTGG
CAGAGAGTGTCTTAACAGATGCAGTCAAAAGCCAAATAAAAGGGAGTCTTGAGTGGAATGGCTCAGGTGCTTTTATCGTC
AATGGTAATAAAACAAATCTAGATGCCAAGGTTTCAAGTAAGCCCTACGCTGATAATAAAACAAAGACAGTGGGCAAGGA
AACAGTGCCAACTGTAGCTAATGCCCTCTTGTCTAAGGCTACTCGTCAGTACAAGAATCGTGAAGAAACTGGGAATGGTT
CGACTTCTTGGACTCCACCAGGCTGGCATCAGGTTAAGAATCTAAAGGGTTCTTATACCCATGCGGTCGATAGAGGTCAC
TTGTTAGGCTATGCCTTAATTGGTGGCTTGGATGGTTTTGATGCCTCGACAAGCAATCCTAAAAACATTGCTGTTCAAAC
AGCTTGGGCAAATCAGGCGCAGGCCGAGGATTCGACTGGTCAAAACTACTATGAAAGCATGGTACGCAAGGCCTTGGATA
AAAATAAGCGTGTCCGTTACCGTGTAACCCTTTATTACGCTACAAATGAGGATTTAGTTCCTTCAGCTTCACAGATTGAA
GCCAAGTCTTCAGACGGAGAATTGGAATTTAATGTTCTAGTTCCCAATGTTCAAAAGGGGCTTCAACTGGATTACCGAAC
TGGAGAAGTGACTGTTACTCAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(75-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

95.62

100

0.956
  endA Streptococcus pneumoniae D39

95.62

100

0.956
  endA Streptococcus pneumoniae R6

95.62

100

0.956
  endA Streptococcus pneumoniae TIGR4

95.62

100

0.956

Multiple sequence alignment