Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E1950_RS02005 Genome accession   NZ_CP039162
Coordinates   416205..416801 (+) Length   198 a.a.
NCBI ID   WP_000559159.1    Uniprot ID   Q99WC3
Organism   Staphylococcus aureus strain Lr12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 411205..421801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1950_RS01975 (E1950_02015) treR 412130..412858 (+) 729 WP_001118675.1 trehalose operon repressor -
  E1950_RS01985 (E1950_02025) - 413262..413363 (+) 102 WP_001790661.1 hypothetical protein -
  E1950_RS01990 (E1950_02030) - 413501..414025 (+) 525 WP_001167828.1 GNAT family N-acetyltransferase -
  E1950_RS01995 (E1950_02035) dnaX 414094..415791 (+) 1698 WP_001109040.1 DNA polymerase III subunit gamma/tau -
  E1950_RS02000 (E1950_02040) - 415881..416198 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  E1950_RS02005 (E1950_02045) recR 416205..416801 (+) 597 WP_000559159.1 recombination mediator RecR Machinery gene
  E1950_RS02010 (E1950_02050) - 417006..417111 (+) 106 Protein_391 hypothetical protein -
  E1950_RS02025 (E1950_02065) - 418985..420322 (+) 1338 WP_000812829.1 aminotransferase class V-fold PLP-dependent enzyme -
  E1950_RS02030 (E1950_02070) tmk 420324..420941 (+) 618 WP_001272126.1 dTMP kinase -
  E1950_RS02035 (E1950_02075) - 420969..421298 (+) 330 WP_000781979.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22072.49 Da        Isoelectric Point: 4.7564

>NTDB_id=317033 E1950_RS02005 WP_000559159.1 416205..416801(+) (recR) [Staphylococcus aureus strain Lr12]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKSDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=317033 E1950_RS02005 WP_000559159.1 416205..416801(+) (recR) [Staphylococcus aureus strain Lr12]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAACAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCACCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAGCG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q99WC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment