Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   E5N77_RS05915 Genome accession   NZ_CP039123
Coordinates   1345437..1346075 (+) Length   212 a.a.
NCBI ID   WP_136235251.1    Uniprot ID   -
Organism   Streptomyces sp. SS52     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340437..1351075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5N77_RS05885 (E5N77_05885) - 1340634..1342355 (-) 1722 WP_019327503.1 urease subunit alpha -
  E5N77_RS05890 (E5N77_05890) - 1342348..1342659 (-) 312 WP_019327504.1 urease subunit beta -
  E5N77_RS05895 (E5N77_05895) - 1342676..1342978 (-) 303 WP_019327505.1 urease subunit gamma -
  E5N77_RS05900 (E5N77_05900) - 1343143..1343796 (-) 654 WP_019327506.1 TetR/AcrR family transcriptional regulator -
  E5N77_RS05905 (E5N77_05905) - 1343901..1344890 (+) 990 WP_125537458.1 ABC transporter permease -
  E5N77_RS05910 (E5N77_05910) - 1345006..1345287 (-) 282 WP_125537457.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  E5N77_RS05915 (E5N77_05915) clpP 1345437..1346075 (+) 639 WP_136235251.1 ATP-dependent Clp protease proteolytic subunit Regulator
  E5N77_RS05920 (E5N77_05920) - 1346083..1346391 (+) 309 WP_127439896.1 hypothetical protein -
  E5N77_RS05925 (E5N77_05925) - 1346930..1347403 (+) 474 WP_029393792.1 C40 family peptidase -
  E5N77_RS05930 (E5N77_05930) - 1347396..1347878 (-) 483 WP_030977041.1 ATP-binding protein -
  E5N77_RS05935 (E5N77_05935) - 1348093..1348956 (+) 864 WP_136235252.1 helix-turn-helix transcriptional regulator -
  E5N77_RS05940 (E5N77_05940) - 1348966..1349220 (+) 255 WP_031021595.1 DUF397 domain-containing protein -
  E5N77_RS05945 (E5N77_05945) - 1349263..1350390 (-) 1128 WP_136235253.1 8-amino-7-oxononanoate synthase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22958.15 Da        Isoelectric Point: 6.8423

>NTDB_id=316772 E5N77_RS05915 WP_136235251.1 1345437..1346075(+) (clpP) [Streptomyces sp. SS52]
MTRPSARHVLPEFTERTGAGQRALDPYAKLLEERIVFLGTPIDDTSANDVPAQLLYLEHQDPDRDIALYINSPGGSFTAV
MTIYDTMRHVACDVATTCLGQAGPPAAFLLAAGTPGKRAVLPGARVVIHQPSLTEPVHGQARDLAVRAGELARVRARLEE
ILVRHTGRTPEQVGADLERETVLDARQALEYGLVDRIVPGRGVPPRHTPGAR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=316772 E5N77_RS05915 WP_136235251.1 1345437..1346075(+) (clpP) [Streptomyces sp. SS52]
ATGACCAGGCCGTCCGCCCGTCACGTCCTGCCCGAGTTCACCGAGCGCACCGGTGCCGGGCAGCGGGCGCTGGACCCGTA
CGCCAAGCTGCTGGAGGAACGGATCGTCTTCCTGGGAACACCGATCGACGACACCTCGGCGAACGACGTGCCGGCGCAGC
TCCTGTACCTGGAGCACCAGGACCCGGACCGCGACATCGCCCTGTACATCAACTCCCCCGGCGGTTCCTTCACCGCCGTG
ATGACGATCTACGACACGATGCGCCACGTCGCCTGCGACGTGGCGACGACCTGTCTGGGACAGGCCGGTCCGCCCGCCGC
GTTCCTGCTCGCGGCGGGCACGCCGGGCAAGCGCGCCGTGCTGCCCGGCGCGCGGGTGGTGATCCACCAGCCCTCCCTGA
CCGAGCCGGTCCACGGGCAGGCCCGCGACCTGGCCGTCCGGGCGGGCGAACTGGCCCGCGTCCGCGCCCGACTGGAGGAG
ATCCTCGTACGGCACACCGGCCGCACCCCGGAGCAGGTGGGCGCGGACCTCGAACGGGAGACCGTGCTGGACGCGCGCCA
GGCGCTGGAGTACGGCCTGGTGGACCGGATCGTGCCCGGCCGCGGGGTCCCGCCGCGGCACACGCCCGGCGCGAGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

45.026

90.094

0.406
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

42.857

89.151

0.382
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

40.102

92.925

0.373
  clpP Lactococcus lactis subsp. cremoris KW2

40.102

92.925

0.373
  clpP Streptococcus thermophilus LMD-9

40.415

91.038

0.368
  clpP Streptococcus mutans UA159

40.415

91.038

0.368
  clpP Streptococcus pyogenes JRS4

40.415

91.038

0.368
  clpP Streptococcus pyogenes MGAS315

40.415

91.038

0.368
  clpP Streptococcus thermophilus LMG 18311

40.415

91.038

0.368
  clpP Streptococcus pneumoniae Rx1

40

91.981

0.368
  clpP Streptococcus pneumoniae D39

40

91.981

0.368
  clpP Streptococcus pneumoniae R6

40

91.981

0.368
  clpP Streptococcus pneumoniae TIGR4

40

91.981

0.368