Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   D6869_RS12995 Genome accession   NZ_CP032526
Coordinates   1459472..1459876 (+) Length   134 a.a.
NCBI ID   WP_242700771.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 4B0     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1454472..1464876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6869_RS07400 (D6869_07505) - 1454738..1455505 (-) 768 WP_011835328.1 5'-nucleotidase -
  D6869_RS07405 (D6869_07510) - 1455615..1456634 (-) 1020 WP_011835329.1 DUF475 domain-containing protein -
  D6869_RS07410 (D6869_07515) - 1456700..1457200 (-) 501 WP_011835330.1 VanZ family protein -
  D6869_RS07415 (D6869_07520) - 1457242..1457877 (-) 636 WP_011835331.1 YigZ family protein -
  D6869_RS07420 (D6869_07525) comFA 1457934..1459226 (+) 1293 WP_011835332.1 DEAD/DEAH box helicase Machinery gene
  D6869_RS12995 comFC 1459472..1459876 (+) 405 WP_242700771.1 phosphoribosyltransferase family protein Machinery gene
  D6869_RS07430 (D6869_07535) - 1459935..1460513 (-) 579 WP_011835334.1 nucleotidyltransferase family protein -
  D6869_RS07435 (D6869_07540) - 1460530..1460985 (-) 456 WP_011676094.1 diacylglycerol kinase -
  D6869_RS07440 (D6869_07545) ybeY 1460969..1461457 (-) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  D6869_RS07445 (D6869_07550) - 1461687..1462175 (-) 489 WP_011835336.1 NUDIX hydrolase -
  D6869_RS07450 (D6869_07555) - 1462245..1463198 (-) 954 WP_041931308.1 PhoH family protein -
  D6869_RS07455 (D6869_07560) - 1463287..1464819 (-) 1533 WP_011835338.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15677.21 Da        Isoelectric Point: 9.9669

>NTDB_id=316744 D6869_RS12995 WP_242700771.1 1459472..1459876(+) (comFC) [Lactococcus cremoris strain 4B0]
MKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRTYLDLLEKEDTVSQSSLNREGR
LSTTNPFKLKEGEKIPKKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=316744 D6869_RS12995 WP_242700771.1 1459472..1459876(+) (comFC) [Lactococcus cremoris strain 4B0]
ATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAAAAATTT
GTCCAAAAAAATTCCTCTGGTTCCTATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGGTTTAACCAAGTAACAGCTT
TTCTAAAAGATAGAACTTATCTTGATTTGCTTGAAAAAGAGGATACTGTCAGCCAATCAAGTCTTAATCGCGAGGGACGT
TTATCAACTACCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCAAAAAAATCATTTTGATTGATGATATTTATAC
AACTGGAACTACTTTTTATCATGCTATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTCTCACTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(79-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

98.507

100

0.985
  comFC/cflB Streptococcus mitis NCTC 12261

51.079

100

0.53
  comFC/cflB Streptococcus pneumoniae TIGR4

49.64

100

0.515
  comFC/cflB Streptococcus pneumoniae Rx1

49.64

100

0.515
  comFC/cflB Streptococcus pneumoniae D39

49.64

100

0.515
  comFC/cflB Streptococcus pneumoniae R6

49.64

100

0.515
  comFC/cflB Streptococcus mitis SK321

48.921

100

0.507
  comFC Latilactobacillus sakei subsp. sakei 23K

36.552

100

0.396
  comFC Bacillus subtilis subsp. subtilis str. 168

37.063

100

0.396

Multiple sequence alignment