Detailed information NTG0316520

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: E5Q06_RS09930
• Genome accession: NZ_CP038979
• Coordinates: 1989696..1990310 (+)
• Length: 204 a.a.
• NCBI ID: WP_010888605.1
• Uniprot ID: Q9RSZ7
• Organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1984696..1995310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5Q06_RS09900	pgeF	1984751..1985512 (-)	762	WP_010888599.1	peptidoglycan editing factor PgeF	-
E5Q06_RS09905	-	1985606..1986400 (+)	795	WP_010888600.1	enoyl-ACP reductase FabI	-
E5Q06_RS09910	-	1986609..1987247 (-)	639	WP_027479823.1	nitroreductase family protein	-
E5Q06_RS09915	-	1987369..1987686 (+)	318	WP_063653039.1	winged helix-turn-helix transcriptional regulator	-
E5Q06_RS09920	-	1987757..1988242 (-)	486	WP_010888603.1	GreA/GreB family elongation factor	-
E5Q06_RS09925	-	1988438..1989622 (+)	1185	WP_051618904.1	MFS transporter	-
E5Q06_RS09930	clpP	1989696..1990310 (+)	615	WP_010888605.1	ATP-dependent Clp protease proteolytic subunit	Regulator
E5Q06_RS09935	clpX	1990307..1991517 (+)	1211	Protein_1948	ATP-dependent Clp protease ATP-binding subunit ClpX	-
E5Q06_RS09940	lon	1991664..1994105 (+)	2442	WP_027479826.1	endopeptidase La	-
E5Q06_RS09945	-	1994158..1995042 (-)	885	WP_010888608.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 204 a.a.
• Molecular weight: 23025.54 Da
• Isoelectric Point: 4.8137

>NTDB_id=316520 E5Q06_RS09930 WP_010888605.1 1989696..1990310(+) (clpP) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2]
MEVMSVIPYVIEQTGRGERSYDIYSRLLKDRIIFVGTPVESQMANSIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAI
YDTMRYIKAPVSTICVGMAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLKLRDTLVDIYHKH
TDLPQEKLLRDMERDYFMSPEEALKYGLIDQVIDQTRENRGGEE

Nucleotide

• Length: 615 bp

>NTDB_id=316520 E5Q06_RS09930 WP_010888605.1 1989696..1990310(+) (clpP) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939 substr. S2]
ATGGAGGTTATGAGTGTGATTCCCTACGTAATCGAGCAGACCGGACGCGGCGAGCGGTCCTACGACATCTACTCGCGGCT
GCTCAAAGACCGGATTATTTTCGTGGGGACGCCCGTCGAGTCGCAGATGGCGAACTCCATCGTGGCGCAACTGCTGCTGC
TCGATTCGCAAAACCCCGAGCAGGAAATTCAGATGTACATCAACTGCCCCGGCGGCGAAGTCTACGCGGGCCTGGCGATC
TACGACACCATGCGCTACATCAAGGCGCCCGTTTCGACCATCTGCGTCGGCATGGCGATGAGCATGGGCAGTGTCCTCCT
GATGGCCGGCGACAAGGGCAAGCGCATGGCCCTGCCCAACAGCCGCATCATGATTCACCAGGGCTCGGCGGGCTTCCGGG
GCAACACCCCCGACCTCGAAGTGCAGGCCAAAGAAGTCCTCAAGCTGCGCGACACGCTGGTGGACATCTACCACAAGCAC
ACCGACCTGCCGCAGGAAAAGCTGCTGCGTGACATGGAGCGCGACTACTTCATGTCGCCCGAAGAAGCCCTCAAGTACGG
GTTGATCGACCAAGTGATCGACCAGACCCGCGAAAACCGGGGAGGCGAAGAATGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (16-195)

3D structure

• AlphaFold DB: Q9RSZ7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	56.853	96.569	0.549
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.842	93.137	0.529
clpP	Streptococcus pneumoniae Rx1	53.061	96.078	0.51
clpP	Streptococcus pneumoniae D39	53.061	96.078	0.51
clpP	Streptococcus pneumoniae R6	53.061	96.078	0.51
clpP	Streptococcus pneumoniae TIGR4	53.061	96.078	0.51
clpP	Streptococcus pyogenes JRS4	52.85	94.608	0.5
clpP	Streptococcus pyogenes MGAS315	52.85	94.608	0.5
clpP	Streptococcus thermophilus LMG 18311	52.062	95.098	0.495
clpP	Streptococcus thermophilus LMD-9	52.062	95.098	0.495
clpP	Streptococcus mutans UA159	51.269	96.569	0.495
clpP	Lactococcus lactis subsp. cremoris KW2	49.741	94.608	0.471
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	49.223	94.608	0.466