Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D4Z93_RS13015 Genome accession   NZ_CP032416
Coordinates   2805314..2805751 (-) Length   145 a.a.
NCBI ID   WP_119974126.1    Uniprot ID   A0A386H6X0
Organism   Clostridium fermenticellae strain JN500901     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2800314..2810751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4Z93_RS12990 (D4Z93_12990) rplI 2801031..2801477 (-) 447 WP_119974117.1 50S ribosomal protein L9 -
  D4Z93_RS12995 (D4Z93_12995) - 2801477..2803462 (-) 1986 WP_119974119.1 DHH family phosphoesterase -
  D4Z93_RS13000 (D4Z93_13000) - 2803484..2804470 (-) 987 WP_119974121.1 YybS family protein -
  D4Z93_RS13005 (D4Z93_13005) - 2804483..2804800 (-) 318 WP_119974123.1 MazG-like family protein -
  D4Z93_RS13010 (D4Z93_13010) rpsR 2805029..2805283 (-) 255 WP_119974124.1 30S ribosomal protein S18 -
  D4Z93_RS13015 (D4Z93_13015) ssbA 2805314..2805751 (-) 438 WP_119974126.1 single-stranded DNA-binding protein Machinery gene
  D4Z93_RS13020 (D4Z93_13020) rpsF 2805764..2806051 (-) 288 WP_119974127.1 30S ribosomal protein S6 -
  D4Z93_RS13025 (D4Z93_13025) - 2806152..2806340 (-) 189 WP_119974129.1 DUF951 domain-containing protein -
  D4Z93_RS13030 (D4Z93_13030) - 2806342..2807226 (-) 885 WP_119974364.1 mechanosensitive ion channel domain-containing protein -
  D4Z93_RS13035 (D4Z93_13035) - 2807246..2807515 (-) 270 WP_243105956.1 DUF3343 domain-containing protein -
  D4Z93_RS13040 (D4Z93_13040) ytvI 2807731..2808783 (+) 1053 WP_119974133.1 sporulation integral membrane protein YtvI -
  D4Z93_RS13045 (D4Z93_13045) yyaC 2808848..2809450 (+) 603 WP_119974134.1 spore protease YyaC -
  D4Z93_RS13050 (D4Z93_13050) - 2809459..2809713 (-) 255 WP_119974136.1 YkuS family protein -
  D4Z93_RS13055 (D4Z93_13055) - 2809855..2810352 (-) 498 WP_119974138.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16068.83 Da        Isoelectric Point: 4.7621

>NTDB_id=315654 D4Z93_RS13015 WP_119974126.1 2805314..2805751(-) (ssbA) [Clostridium fermenticellae strain JN500901]
MNRVVLIGRLTKDPELKFTPGTGAAVTTFTIAIDRRFSRDGQREADFIPIVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGSRRYVTEVVADEVQFLEWGNKAVSSNNTNSPEQSQNTQGFNDSIYGEDITPVDDGDIPF

Nucleotide


Download         Length: 438 bp        

>NTDB_id=315654 D4Z93_RS13015 WP_119974126.1 2805314..2805751(-) (ssbA) [Clostridium fermenticellae strain JN500901]
TTGAATAGAGTTGTTTTGATTGGAAGATTAACTAAAGATCCTGAGTTGAAGTTTACTCCAGGGACTGGAGCAGCTGTTAC
TACTTTCACTATAGCTATTGATAGAAGATTTTCTAGAGATGGTCAAAGGGAAGCTGATTTCATACCGATAGTTGTATGGG
GTAAGCAAGCAGAATCAACTGCAAATTACATGAGTAAAGGTAAACTCATAGGAATTTCCGGAAGAATTCAAACGAGAAGT
TATGAAGCTAAAGATGGCAGTCGAAGGTATGTTACTGAGGTTGTTGCTGATGAAGTTCAATTTCTTGAATGGGGAAATAA
GGCAGTATCATCTAACAATACAAATTCACCTGAACAATCTCAAAATACTCAAGGTTTTAATGATTCAATTTATGGAGAGG
ATATTACTCCTGTAGATGATGGAGATATACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A386H6X0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.93

100

0.545
  ssb Latilactobacillus sakei subsp. sakei 23K

42.69

100

0.503
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.123

78.621

0.386
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.398

71.034

0.379
  ssbA Streptococcus mutans UA159

46.957

79.31

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

46.491

78.621

0.366

Multiple sequence alignment