Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | D5R92_RS02610 | Genome accession | NZ_CP032401 |
| Coordinates | 530703..531293 (-) | Length | 196 a.a. |
| NCBI ID | WP_003101547.1 | Uniprot ID | - |
| Organism | Streptococcus iniae strain GX005 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 525703..536293
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5R92_RS02580 (D5R92_02580) | - | 526286..527239 (-) | 954 | WP_016356098.1 | branched-chain amino acid ABC transporter permease | - |
| D5R92_RS02585 (D5R92_02585) | - | 527243..528112 (-) | 870 | WP_016356099.1 | branched-chain amino acid ABC transporter permease | - |
| D5R92_RS02590 (D5R92_02590) | - | 528172..529344 (-) | 1173 | WP_003101539.1 | ABC transporter substrate-binding protein | - |
| D5R92_RS02595 (D5R92_02595) | - | 529483..529761 (-) | 279 | WP_003101541.1 | YlbG family protein | - |
| D5R92_RS02600 (D5R92_02600) | - | 529737..530207 (-) | 471 | WP_016356100.1 | YlbF family regulator | - |
| D5R92_RS02605 (D5R92_02605) | - | 530336..530581 (-) | 246 | WP_003101546.1 | hypothetical protein | - |
| D5R92_RS02610 (D5R92_02610) | clpP | 530703..531293 (-) | 591 | WP_003101547.1 | ATP-dependent Clp protease proteolytic subunit | Regulator |
| D5R92_RS02615 (D5R92_02615) | upp | 531521..532150 (-) | 630 | WP_003101549.1 | uracil phosphoribosyltransferase | - |
| D5R92_RS02620 (D5R92_02620) | - | 532295..533947 (-) | 1653 | WP_003101552.1 | polysaccharide biosynthesis protein | - |
| D5R92_RS02625 (D5R92_02625) | - | 534035..535480 (+) | 1446 | WP_003101555.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21691.01 Da Isoelectric Point: 6.6494
>NTDB_id=315484 D5R92_RS02610 WP_003101547.1 530703..531293(-) (clpP) [Streptococcus iniae strain GX005]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDHTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILAKNSGK
TIKQVHKDAERDYWMSAEETLKYGFIDEIMENNKLK
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDHTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILAKNSGK
TIKQVHKDAERDYWMSAEETLKYGFIDEIMENNKLK
Nucleotide
Download Length: 591 bp
>NTDB_id=315484 D5R92_RS02610 WP_003101547.1 530703..531293(-) (clpP) [Streptococcus iniae strain GX005]
ATGATTCCTGTAGTTATTGAACAAACAAGTCGTGGGGAGCGTTCTTACGATATTTACTCTCGTTTACTAAAAGATCGGAT
CATCATGTTAACTGGTCCGGTCGAAGACAATATGGCTAACTCTGTCATTGCACAGTTGCTTTTTTTGGATGCACAAGATC
ACACTAAAGATATTTATCTTTATGTTAATACCCCAGGTGGTTCCGTTTCTGCTGGTTTAGCCATTGTTGATACAATGAAC
TTTATTAAATCTGATGTTCAAACAATTGTCATGGGAATGGCTGCTTCCATGGGAACAATCATTGCCTCATCAGGGACTAA
AGGGAAACGGTTCATGTTGCCAAATGCTGAATACATGATTCACCAACCAATGGGTGGTACAGGTGGTGGTACGCAGCAAT
CAGATATGGCAATTGCTGCTGAACATCTCTTAAAAACACGTCACACTCTTGAAAAAATATTGGCAAAAAATAGTGGAAAA
ACCATTAAACAAGTTCATAAAGATGCAGAACGTGATTATTGGATGAGTGCAGAAGAAACACTAAAATATGGCTTCATTGA
TGAAATTATGGAAAATAACAAACTTAAGTAA
ATGATTCCTGTAGTTATTGAACAAACAAGTCGTGGGGAGCGTTCTTACGATATTTACTCTCGTTTACTAAAAGATCGGAT
CATCATGTTAACTGGTCCGGTCGAAGACAATATGGCTAACTCTGTCATTGCACAGTTGCTTTTTTTGGATGCACAAGATC
ACACTAAAGATATTTATCTTTATGTTAATACCCCAGGTGGTTCCGTTTCTGCTGGTTTAGCCATTGTTGATACAATGAAC
TTTATTAAATCTGATGTTCAAACAATTGTCATGGGAATGGCTGCTTCCATGGGAACAATCATTGCCTCATCAGGGACTAA
AGGGAAACGGTTCATGTTGCCAAATGCTGAATACATGATTCACCAACCAATGGGTGGTACAGGTGGTGGTACGCAGCAAT
CAGATATGGCAATTGCTGCTGAACATCTCTTAAAAACACGTCACACTCTTGAAAAAATATTGGCAAAAAATAGTGGAAAA
ACCATTAAACAAGTTCATAAAGATGCAGAACGTGATTATTGGATGAGTGCAGAAGAAACACTAAAATATGGCTTCATTGA
TGAAATTATGGAAAATAACAAACTTAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Streptococcus pyogenes MGAS315 |
94.898 |
100 |
0.949 |
| clpP | Streptococcus pyogenes JRS4 |
94.898 |
100 |
0.949 |
| clpP | Streptococcus mutans UA159 |
91.837 |
100 |
0.918 |
| clpP | Streptococcus thermophilus LMD-9 |
90.816 |
100 |
0.908 |
| clpP | Streptococcus thermophilus LMG 18311 |
90.816 |
100 |
0.908 |
| clpP | Streptococcus pneumoniae Rx1 |
90.306 |
100 |
0.903 |
| clpP | Streptococcus pneumoniae D39 |
90.306 |
100 |
0.903 |
| clpP | Streptococcus pneumoniae R6 |
90.306 |
100 |
0.903 |
| clpP | Streptococcus pneumoniae TIGR4 |
90.306 |
100 |
0.903 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
85.714 |
100 |
0.857 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
85.204 |
100 |
0.852 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
56.477 |
98.469 |
0.556 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
56.842 |
96.939 |
0.551 |