Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | D5R90_RS02610 | Genome accession | NZ_CP032400 |
| Coordinates | 530701..531291 (-) | Length | 196 a.a. |
| NCBI ID | WP_003101547.1 | Uniprot ID | - |
| Organism | Streptococcus iniae strain YM011 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 525701..536291
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5R90_RS02580 (D5R90_02580) | - | 526284..527237 (-) | 954 | WP_016356098.1 | branched-chain amino acid ABC transporter permease | - |
| D5R90_RS02585 (D5R90_02585) | - | 527241..528110 (-) | 870 | WP_016356099.1 | branched-chain amino acid ABC transporter permease | - |
| D5R90_RS02590 (D5R90_02590) | - | 528170..529342 (-) | 1173 | WP_003101539.1 | ABC transporter substrate-binding protein | - |
| D5R90_RS02595 (D5R90_02595) | - | 529481..529759 (-) | 279 | WP_003101541.1 | YlbG family protein | - |
| D5R90_RS02600 (D5R90_02600) | - | 529735..530205 (-) | 471 | WP_016356100.1 | YlbF family regulator | - |
| D5R90_RS02605 (D5R90_02605) | - | 530334..530579 (-) | 246 | WP_003101546.1 | hypothetical protein | - |
| D5R90_RS02610 (D5R90_02610) | clpP | 530701..531291 (-) | 591 | WP_003101547.1 | ATP-dependent Clp protease proteolytic subunit | Regulator |
| D5R90_RS02615 (D5R90_02615) | upp | 531519..532148 (-) | 630 | WP_003101549.1 | uracil phosphoribosyltransferase | - |
| D5R90_RS02620 (D5R90_02620) | - | 532293..533945 (-) | 1653 | WP_003101552.1 | polysaccharide biosynthesis protein | - |
| D5R90_RS02625 (D5R90_02625) | - | 534033..535478 (+) | 1446 | WP_003101555.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21691.01 Da Isoelectric Point: 6.6494
>NTDB_id=315429 D5R90_RS02610 WP_003101547.1 530701..531291(-) (clpP) [Streptococcus iniae strain YM011]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDHTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILAKNSGK
TIKQVHKDAERDYWMSAEETLKYGFIDEIMENNKLK
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDHTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILAKNSGK
TIKQVHKDAERDYWMSAEETLKYGFIDEIMENNKLK
Nucleotide
Download Length: 591 bp
>NTDB_id=315429 D5R90_RS02610 WP_003101547.1 530701..531291(-) (clpP) [Streptococcus iniae strain YM011]
ATGATTCCTGTAGTTATTGAACAAACAAGTCGTGGGGAGCGTTCTTACGATATTTACTCTCGTTTACTAAAAGATCGGAT
CATCATGTTAACTGGTCCGGTCGAAGACAATATGGCTAACTCTGTCATTGCACAGTTGCTTTTTTTGGATGCACAAGATC
ACACTAAAGATATTTATCTTTATGTTAATACCCCAGGTGGTTCCGTTTCTGCTGGTTTAGCCATTGTTGATACAATGAAC
TTTATTAAATCTGATGTTCAAACAATTGTCATGGGAATGGCTGCTTCCATGGGAACAATCATTGCCTCATCAGGGACTAA
AGGGAAACGGTTCATGTTGCCAAATGCTGAATACATGATTCACCAACCAATGGGTGGTACAGGTGGTGGTACGCAGCAAT
CAGATATGGCAATTGCTGCTGAACATCTCTTAAAAACACGTCACACTCTTGAAAAAATATTGGCAAAAAATAGTGGAAAA
ACCATTAAACAAGTTCATAAAGATGCAGAACGTGATTATTGGATGAGTGCAGAAGAAACACTAAAATATGGCTTCATTGA
TGAAATTATGGAAAATAACAAACTTAAGTAA
ATGATTCCTGTAGTTATTGAACAAACAAGTCGTGGGGAGCGTTCTTACGATATTTACTCTCGTTTACTAAAAGATCGGAT
CATCATGTTAACTGGTCCGGTCGAAGACAATATGGCTAACTCTGTCATTGCACAGTTGCTTTTTTTGGATGCACAAGATC
ACACTAAAGATATTTATCTTTATGTTAATACCCCAGGTGGTTCCGTTTCTGCTGGTTTAGCCATTGTTGATACAATGAAC
TTTATTAAATCTGATGTTCAAACAATTGTCATGGGAATGGCTGCTTCCATGGGAACAATCATTGCCTCATCAGGGACTAA
AGGGAAACGGTTCATGTTGCCAAATGCTGAATACATGATTCACCAACCAATGGGTGGTACAGGTGGTGGTACGCAGCAAT
CAGATATGGCAATTGCTGCTGAACATCTCTTAAAAACACGTCACACTCTTGAAAAAATATTGGCAAAAAATAGTGGAAAA
ACCATTAAACAAGTTCATAAAGATGCAGAACGTGATTATTGGATGAGTGCAGAAGAAACACTAAAATATGGCTTCATTGA
TGAAATTATGGAAAATAACAAACTTAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Streptococcus pyogenes MGAS315 |
94.898 |
100 |
0.949 |
| clpP | Streptococcus pyogenes JRS4 |
94.898 |
100 |
0.949 |
| clpP | Streptococcus mutans UA159 |
91.837 |
100 |
0.918 |
| clpP | Streptococcus thermophilus LMD-9 |
90.816 |
100 |
0.908 |
| clpP | Streptococcus thermophilus LMG 18311 |
90.816 |
100 |
0.908 |
| clpP | Streptococcus pneumoniae Rx1 |
90.306 |
100 |
0.903 |
| clpP | Streptococcus pneumoniae D39 |
90.306 |
100 |
0.903 |
| clpP | Streptococcus pneumoniae R6 |
90.306 |
100 |
0.903 |
| clpP | Streptococcus pneumoniae TIGR4 |
90.306 |
100 |
0.903 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
85.714 |
100 |
0.857 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
85.204 |
100 |
0.852 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
56.477 |
98.469 |
0.556 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
56.842 |
96.939 |
0.551 |