Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   D4A37_RS26805 Genome accession   NZ_CP032365
Coordinates   5096088..5096669 (+) Length   193 a.a.
NCBI ID   WP_001049163.1    Uniprot ID   A0A366GQ86
Organism   Bacillus wiedmannii strain SR52     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5091088..5101669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS26770 - 5092082..5092288 (+) 207 WP_000216160.1 DUF1657 domain-containing protein -
  D4A37_RS26775 - 5092382..5092870 (+) 489 WP_001228530.1 YhcN/YlaJ family sporulation lipoprotein -
  D4A37_RS26780 spoVAC 5092899..5093375 (+) 477 WP_000095409.1 stage V sporulation protein AC -
  D4A37_RS26785 spoVAD 5093376..5094392 (+) 1017 WP_000938954.1 stage V sporulation protein AD -
  D4A37_RS26790 spoVAE 5094389..5094739 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  D4A37_RS26795 - 5094751..5094957 (+) 207 WP_000215899.1 DUF1657 domain-containing protein -
  D4A37_RS26800 - 5094978..5095847 (+) 870 WP_000018900.1 DUF421 domain-containing protein -
  D4A37_RS26805 clpP 5096088..5096669 (+) 582 WP_001049163.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  D4A37_RS26815 - 5097075..5097323 (-) 249 WP_000250305.1 HPr family phosphocarrier protein -
  D4A37_RS26820 whiA 5097347..5098297 (-) 951 WP_000006569.1 DNA-binding protein WhiA -
  D4A37_RS26825 - 5098387..5099340 (-) 954 WP_000712182.1 YvcK family protein -
  D4A37_RS26830 rapZ 5099344..5100225 (-) 882 WP_000138461.1 RNase adapter RapZ -
  D4A37_RS26835 - 5100246..5100704 (-) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21447.68 Da        Isoelectric Point: 5.0423

>NTDB_id=315215 D4A37_RS26805 WP_001049163.1 5096088..5096669(+) (clpP) [Bacillus wiedmannii strain SR52]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAERALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=315215 D4A37_RS26805 WP_001049163.1 5096088..5096669(+) (clpP) [Bacillus wiedmannii strain SR52]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAATAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATTTACGATACA
ATGCAATTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGCGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATTGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACAGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCTGAAAGAGCTCTAGAATACGGCTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GQ86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554

Multiple sequence alignment