Detailed information NTG0315043

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: D4N38_RS05820
• Genome accession: NZ_CP032352
• Coordinates: 1229937..1232168 (-)
• Length: 743 a.a.
• NCBI ID: WP_011060099.1
• Uniprot ID: Q4KFT8
• Organism: Pseudomonas protegens strain pf5-k3
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1224937..1237168

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4N38_RS05785 (D4N38_05780)	murB	1225313..1226332 (-)	1020	WP_011060106.1	UDP-N-acetylmuramate dehydrogenase	-
D4N38_RS05790 (D4N38_05785)	-	1226329..1226793 (-)	465	WP_011060105.1	low molecular weight protein-tyrosine-phosphatase	-
D4N38_RS05795 (D4N38_05790)	kdsB	1226793..1227557 (-)	765	WP_011060104.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
D4N38_RS05800 (D4N38_05795)	-	1227554..1227739 (-)	186	WP_011060103.1	Trm112 family protein	-
D4N38_RS05805 (D4N38_05800)	lpxK	1227764..1228774 (-)	1011	WP_011060102.1	tetraacyldisaccharide 4'-kinase	-
D4N38_RS05810 (D4N38_05805)	-	1228774..1229202 (-)	429	WP_011060101.1	biopolymer transporter ExbD	-
D4N38_RS05815 (D4N38_05810)	exbB	1229199..1229834 (-)	636	WP_011060100.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
D4N38_RS05820 (D4N38_05815)	comA	1229937..1232168 (-)	2232	WP_011060099.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
D4N38_RS05825 (D4N38_05820)	-	1232308..1232823 (+)	516	WP_011060098.1	DUF2062 domain-containing protein	-
D4N38_RS05830 (D4N38_05825)	-	1232877..1233656 (-)	780	WP_011060097.1	ABC transporter permease	-
D4N38_RS05835 (D4N38_05830)	-	1233653..1234585 (-)	933	WP_011060096.1	ABC transporter ATP-binding protein	-
D4N38_RS05840 (D4N38_05835)	-	1234718..1235341 (-)	624	WP_011060095.1	glutathione S-transferase family protein	-
D4N38_RS05845 (D4N38_05840)	-	1235384..1236043 (-)	660	WP_011060094.1	transglutaminase family protein	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81335.70 Da
• Isoelectric Point: 10.8644

>NTDB_id=315043 D4N38_RS05820 WP_011060099.1 1229937..1232168(-) (comA) [Pseudomonas protegens strain pf5-k3]
MRSAMLALAAGLLALGFMPALPPGWLLLCMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLESQTRWLEG
RVSGLPEQAGGVVRFELEDAQARRERLPRRMRLAWHEGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLAPAPQAWRQGLRQRLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFA
VAGLARHGLWPERLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
ASLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAIGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLPVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWVPPQIPLWLWGMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVQRAMPVGEVRGGQPDALPAGLQARPCDSGLSWVWNGVRFRQWQWAAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPHPQVLARYRRLDMAIYDSAEQGALRLQL
GAFGAAHGLREQRRFWREPPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=315043 D4N38_RS05820 WP_011060099.1 1229937..1232168(-) (comA) [Pseudomonas protegens strain pf5-k3]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCGGGGCTGCTGGCGCTGGGTTTCATGCCGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTGTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTCTCCGCGCAGTCGGCCCTTGATGATCGCCTGGCGCCGCGCCTGGAGTCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCGGCT
GCCCCGGCGCATGCGGCTGGCCTGGCATGAGGGCCCGGCGCTCAAGAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTTC
GCCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTGGCACCGGCCCCGCAGGCCTGGCGGCAAGGCTTGCGCCAGCGCTTGCTAGAGGTCGA
GGCCCAGGGGCGCGGTGCGGGGTTGGCGGCGCTGGTGATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTCCACCTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCGCG
GTGGCCGGGCTGGCCCGCCATGGTCTCTGGCCCGAGCGCTTGCCGTGGTTGCCCTGGGCCTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTACGGCCTGCTGGCGGGGTTCGATGTGCCAGTGCAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTGTTGCTGGCCGAGCCGCTG
GCCAGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCATTGGCCTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGCTTTCTGGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGCCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGGTGCCGCCGCAGATCCCTCTGTGGCTATGGGGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTCCTGGCGGTC
TGGCCACCCCTGGCGCGCGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGTACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCCGGTGGCGCC
CAGGCGGTGCAGCGCGCAATGCCCGTGGGCGAGGTCCGCGGTGGCCAACCCGACGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGCAGCGGCGACCGACGGCA
ATCAGGCTTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCCTGCTGCTCACCGGGGACATCGACGCCCGTGCCGAA
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCACCCCATCACGGCAGCCGCACCTCTTCATC
CATGGCCTTGCTGCAACGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGGCGGGGCAATGCCTTCGGCCACCCCCATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGACATGGCAATTTATGACAGCGCCGAACAGGGCGCTCTGAGGCTGCAACTG
GGGGCTTTCGGGGCGGCGCATGGCCTTCGCGAGCAACGGCGATTCTGGCGTGAGCCGCCCGCAATGCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

3D structure

• AlphaFold DB: Q4KFT8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.575	96.501	0.623