Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   D3A95_RS05535 Genome accession   NZ_CP032152
Coordinates   1144979..1145344 (-) Length   121 a.a.
NCBI ID   WP_181496648.1    Uniprot ID   A0A3B7MAY4
Organism   Thermosynechococcus sichuanensis E542     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1139979..1150344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3A95_RS05525 (D3A95_05595) - 1141053..1144244 (-) 3192 WP_181496646.1 HAMP domain-containing methyl-accepting chemotaxis protein -
  D3A95_RS05530 (D3A95_05600) - 1144443..1144973 (-) 531 WP_181496647.1 chemotaxis protein CheW -
  D3A95_RS05535 (D3A95_05605) pilH 1144979..1145344 (-) 366 WP_181496648.1 response regulator transcription factor Machinery gene
  D3A95_RS05540 (D3A95_05610) - 1145440..1146630 (-) 1191 WP_181496649.1 response regulator -
  D3A95_RS05545 (D3A95_05615) - 1146688..1147323 (-) 636 WP_181496650.1 MerR family transcriptional regulator -
  D3A95_RS05550 (D3A95_05620) aroA 1147644..1148966 (-) 1323 WP_181496651.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  D3A95_RS05555 (D3A95_05625) - 1149015..1149557 (-) 543 WP_181496652.1 TIGR04376 family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13504.60 Da        Isoelectric Point: 4.5748

>NTDB_id=314116 D3A95_RS05535 WP_181496648.1 1144979..1145344(-) (pilH) [Thermosynechococcus sichuanensis E542]
MSKVLVVEDSPPQREMISELLAKTGFEVTVATDGVEAMEQLQQSTPDVVVLDIVMPRMNGYEVCRQIKADPRTQSIPVVI
CSSKGEEFDRYWGMKQGADAYITKPFDPKELVGTIKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=314116 D3A95_RS05535 WP_181496648.1 1144979..1145344(-) (pilH) [Thermosynechococcus sichuanensis E542]
ATGAGTAAAGTCTTAGTCGTTGAAGATAGTCCCCCCCAGCGAGAAATGATTAGTGAGTTGCTAGCGAAAACAGGCTTTGA
AGTCACTGTCGCCACCGATGGCGTGGAGGCAATGGAGCAATTGCAGCAGAGTACACCCGATGTGGTTGTCCTCGACATTG
TCATGCCCCGCATGAATGGCTATGAAGTCTGTCGCCAAATCAAGGCCGATCCCCGCACCCAATCCATTCCCGTGGTCATC
TGTAGCTCTAAAGGTGAGGAGTTTGATCGCTATTGGGGCATGAAACAAGGGGCTGATGCGTACATTACGAAGCCCTTTGA
CCCCAAAGAACTCGTTGGCACCATCAAGCAACTCTTGCGAGGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7MAY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

71.901

100

0.719
  pilG Acinetobacter baumannii strain A118

42.609

95.041

0.405
  micA Streptococcus pneumoniae Cp1015

40.833

99.174

0.405
  pilL-C Synechocystis sp. PCC 6803

41.176

98.347

0.405
  scnR Streptococcus mutans UA159

39.496

98.347

0.388
  vicR Streptococcus mutans UA159

36.667

99.174

0.364
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364

Multiple sequence alignment