Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | LL1196_RS03845 | Genome accession | NZ_CP032148 |
| Coordinates | 727525..728124 (-) | Length | 199 a.a. |
| NCBI ID | WP_011834647.1 | Uniprot ID | A0A166TF89 |
| Organism | Lactococcus cremoris strain 1196 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 727510..741959 | 727525..728124 | within | 0 |
Gene organization within MGE regions
Location: 727510..741959
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL1196_RS03845 (LL1196_0720) | clpP | 727525..728124 (-) | 600 | WP_011834647.1 | ATP-dependent Clp protease proteolytic subunit | Regulator |
| LL1196_RS03850 (LL1196_0721) | - | 728320..728850 (+) | 531 | WP_011675638.1 | hypothetical protein | - |
| LL1196_RS03855 (LL1196_0722) | spx | 729020..729418 (+) | 399 | WP_003129597.1 | transcriptional regulator Spx | - |
| LL1196_RS03860 (LL1196_03010) | - | 729569..729703 (-) | 135 | WP_014572996.1 | hypothetical protein | - |
| LL1196_RS03865 (LL1196_0723) | - | 729800..730963 (-) | 1164 | WP_021216083.1 | ABC transporter permease | - |
| LL1196_RS03870 (LL1196_03015) | - | 731291..733971 (+) | 2681 | Protein_734 | cation-translocating P-type ATPase | - |
| LL1196_RS03875 (LL1196_0727) | - | 734030..735141 (+) | 1112 | WP_262668432.1 | IS3-like element IS981 family transposase | - |
| LL1196_RS03880 (LL1196_03020) | - | 735309..735455 (+) | 147 | WP_011675641.1 | hypothetical protein | - |
| LL1196_RS03885 (LL1196_0728) | - | 735562..736452 (+) | 891 | WP_205536422.1 | IS982 family transposase | - |
| LL1196_RS03890 (LL1196_0729) | istB | 736773..737531 (-) | 759 | WP_003331414.1 | IS21-like element IS712 family helper ATPase IstB | - |
| LL1196_RS03895 (LL1196_0730) | istA | 737543..738766 (-) | 1224 | WP_003331415.1 | IS21-like element IS712 family transposase | - |
| LL1196_RS03900 (LL1196_0732) | - | 738964..739782 (+) | 819 | WP_031288961.1 | polysaccharide deacetylase family protein | - |
| LL1196_RS03905 (LL1196_0734) | - | 739952..741099 (+) | 1148 | WP_134794176.1 | IS3 family transposase | - |
Sequence
Protein
Download Length: 199 a.a. Molecular weight: 22052.21 Da Isoelectric Point: 4.7423
>NTDB_id=314077 LL1196_RS03845 WP_011834647.1 727525..728124(-) (clpP) [Lactococcus cremoris strain 1196]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK
Nucleotide
Download Length: 600 bp
>NTDB_id=314077 LL1196_RS03845 WP_011834647.1 727525..728124(-) (clpP) [Lactococcus cremoris strain 1196]
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGTATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTGCCCAACTTCTTTTCTTGGATG
CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACCCCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT
ACAATGAACTTTATCAAATCGGATGTCCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCAAG
CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA
CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAACACGTAAACGTTTGGAACAAATCCTTGCTGATAAT
TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG
TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGTATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTGCCCAACTTCTTTTCTTGGATG
CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACCCCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT
ACAATGAACTTTATCAAATCGGATGTCCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCAAG
CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA
CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAACACGTAAACGTTTGGAACAAATCCTTGCTGATAAT
TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG
TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Lactococcus lactis subsp. cremoris KW2 |
100 |
100 |
1 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
99.497 |
100 |
0.995 |
| clpP | Streptococcus mutans UA159 |
87.245 |
98.492 |
0.859 |
| clpP | Streptococcus thermophilus LMD-9 |
86.735 |
98.492 |
0.854 |
| clpP | Streptococcus thermophilus LMG 18311 |
86.735 |
98.492 |
0.854 |
| clpP | Streptococcus pyogenes MGAS315 |
85.714 |
98.492 |
0.844 |
| clpP | Streptococcus pyogenes JRS4 |
85.714 |
98.492 |
0.844 |
| clpP | Streptococcus pneumoniae D39 |
84.615 |
97.99 |
0.829 |
| clpP | Streptococcus pneumoniae TIGR4 |
84.615 |
97.99 |
0.829 |
| clpP | Streptococcus pneumoniae R6 |
84.615 |
97.99 |
0.829 |
| clpP | Streptococcus pneumoniae Rx1 |
84.615 |
97.99 |
0.829 |
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
57.895 |
95.477 |
0.553 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
56.995 |
96.985 |
0.553 |