Detailed information NTG0314049

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: D2M30_RS17210
• Genome accession: NZ_CP032146
• Coordinates: 3373643..3374239 (+)
• Length: 198 a.a.
• NCBI ID: WP_003151513.1
• Uniprot ID: I2CAH7
• Organism: Bacillus amyloliquefaciens strain YP6
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3368643..3379239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D2M30_RS17180 (D2M30_17205)	-	3368683..3368994 (+)	312	WP_088613509.1	hypothetical protein	-
D2M30_RS17190 (D2M30_17215)	-	3369305..3370773 (-)	1469	Protein_3348	glycoside hydrolase family 32 protein	-
D2M30_RS17195 (D2M30_17220)	-	3370766..3372019 (-)	1254	WP_125123291.1	MFS transporter	-
D2M30_RS17205 (D2M30_17230)	-	3372391..3373365 (+)	975	WP_045512236.1	LacI family DNA-binding transcriptional regulator	-
D2M30_RS17210 (D2M30_17235)	clpP	3373643..3374239 (+)	597	WP_003151513.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
D2M30_RS17215 (D2M30_17240)	-	3374281..3375141 (-)	861	WP_125123293.1	LysR family transcriptional regulator	-
D2M30_RS17220 (D2M30_17245)	-	3375313..3376443 (+)	1131	WP_125123294.1	2-methylaconitate cis-trans isomerase PrpF family protein	-
D2M30_RS17225 (D2M30_17250)	-	3376487..3377863 (+)	1377	WP_125123295.1	MFS transporter	-
D2M30_RS17230 (D2M30_17255)	-	3378047..3378886 (+)	840	WP_125123296.1	hypothetical protein	-

Sequence

Protein

• Length: 198 a.a.
• Molecular weight: 21831.06 Da
• Isoelectric Point: 4.6982

>NTDB_id=314049 D2M30_RS17210 WP_003151513.1 3373643..3374239(+) (clpP) [Bacillus amyloliquefaciens strain YP6]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSADEALEYGLIDKVLTRNTEDQK

Nucleotide

• Length: 597 bp

>NTDB_id=314049 D2M30_RS17210 WP_003151513.1 3373643..3374239(+) (clpP) [Bacillus amyloliquefaciens strain YP6]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGAGAAAGAGCTTATGACATTTACTCCCGTCTTTTGAAGGA
CCGTATTATCATGCTTGGATCTGCGATTGATGACAACGTTGCAAACTCCATCGTGTCACAGCTTTTATTCCTTGAAGCGG
AAGACCCTGAAAAAGATATTTCCATTTACATTAACAGCCCTGGCGGATCAATCACTGCCGGTATGGCAATCTATGATACA
ATGCAGTTCATTAAACCGAAAGTATCCACGATCTGCATCGGTATGGCCGCTTCTATGGGAGCATTCTTACTTGCTGCCGG
AGAAAAAGGCAAACGTTACGCGCTTCCTAACAGTGAAGTCATGATTCACCAGCCGCTTGGCGGAGCGCAAGGACAGGCGA
CTGAAATTGAAATCGCGGCAAAACGCATTCTCTTGCTTCGCGATAAATTAAACAAAGTGCTTGCTGAACGTACCGGCCAG
CCGCTTGAAGTGATCGAGCGCGACACGGACCGTGACAACTTCAAATCAGCTGATGAAGCTTTAGAATACGGCTTAATCGA
TAAAGTGCTGACACGCAATACGGAAGACCAGAAGTAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (13-192)

3D structure

• AlphaFold DB: I2CAH7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	95.96	100	0.96
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.586	96.465	0.662
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Streptococcus pneumoniae D39	57.216	97.98	0.561
clpP	Streptococcus pneumoniae Rx1	57.216	97.98	0.561
clpP	Streptococcus pneumoniae R6	57.216	97.98	0.561
clpP	Streptococcus pneumoniae TIGR4	57.216	97.98	0.561
clpP	Lactococcus lactis subsp. cremoris KW2	56.701	97.98	0.556
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.639	97.98	0.535
clpP	Streptococcus mutans UA159	54.639	97.98	0.535