Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SEZ_RS00730 Genome accession   NC_011134
Coordinates   129237..130271 (+) Length   344 a.a.
NCBI ID   WP_228275455.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus MGCS10565     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 124237..135271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEZ_RS00710 (Sez_0112) - 124637..125002 (+) 366 WP_012514777.1 DUF1033 family protein -
  SEZ_RS09570 - 125279..125470 (+) 192 Protein_110 lactococcin 972 family bacteriocin -
  SEZ_RS00715 (Sez_0113) - 125535..127538 (+) 2004 WP_012514778.1 DUF1430 domain-containing protein -
  SEZ_RS00720 (Sez_0114) - 127540..128208 (+) 669 WP_012514779.1 ATP-binding cassette domain-containing protein -
  SEZ_RS00725 (Sez_0115) comGA/cglA 128366..129304 (+) 939 WP_012514780.1 competence type IV pilus ATPase ComGA Machinery gene
  SEZ_RS00730 (Sez_0116) comYB 129237..130271 (+) 1035 WP_228275455.1 competence type IV pilus assembly protein ComGB Machinery gene
  SEZ_RS00735 (Sez_0117) comGC/cglC 130272..130595 (+) 324 WP_012514782.1 competence type IV pilus major pilin ComGC Machinery gene
  SEZ_RS00740 (Sez_0118) comGD 130573..130998 (+) 426 WP_012514783.1 competence type IV pilus minor pilin ComGD -
  SEZ_RS00745 comGE 130955..131246 (+) 292 Protein_117 competence type IV pilus minor pilin ComGE -
  SEZ_RS00750 (Sez_0119) comYF 131233..131667 (+) 435 WP_037580631.1 competence type IV pilus minor pilin ComGF Machinery gene
  SEZ_RS00755 (Sez_0120) comGG 131645..132007 (+) 363 WP_012514785.1 competence type IV pilus minor pilin ComGG -
  SEZ_RS00770 (Sez_0123) comYH 133501..134454 (+) 954 WP_012514788.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39456.61 Da        Isoelectric Point: 9.3195

>NTDB_id=31351 SEZ_RS00730 WP_228275455.1 129237..130271(+) (comYB) [Streptococcus equi subsp. zooepidemicus MGCS10565]
MISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=31351 SEZ_RS00730 WP_228275455.1 129237..130271(+) (comYB) [Streptococcus equi subsp. zooepidemicus MGCS10565]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAAGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAATGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTCATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGATTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACGTATCCGATCATACTTTTAGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGCTTTTGTCTGCTTTTGCTGTCGCTGATTGGCTCGTTTTACCTATATGCCAGGTCCTG
TAGCAGGTTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAAATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(29-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.277

98.547

0.535
  comYB Streptococcus mutans UA159

54.277

98.547

0.535
  comYB Streptococcus gordonii str. Challis substr. CH1

52.647

98.837

0.52
  comGB/cglB Streptococcus mitis SK321

48.649

96.802

0.471
  comGB/cglB Streptococcus mitis NCTC 12261

48.204

97.093

0.468
  comGB/cglB Streptococcus pneumoniae Rx1

48.048

96.802

0.465
  comGB/cglB Streptococcus pneumoniae D39

48.048

96.802

0.465
  comGB/cglB Streptococcus pneumoniae R6

48.048

96.802

0.465
  comGB/cglB Streptococcus pneumoniae TIGR4

48.048

96.802

0.465
  comGB Lactococcus lactis subsp. cremoris KW2

45.723

98.547

0.451

Multiple sequence alignment