Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   DDV21_RS08260 Genome accession   NZ_CP031733
Coordinates   1735286..1735996 (-) Length   236 a.a.
NCBI ID   WP_116879125.1    Uniprot ID   A0A372KIT5
Organism   Streptococcus chenjunshii strain Z15     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1730286..1740996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS08245 (DDV21_008245) rnc 1731813..1732499 (-) 687 WP_116878190.1 ribonuclease III -
  DDV21_RS08250 (DDV21_008250) vicX 1733123..1733932 (-) 810 WP_116879123.1 MBL fold metallo-hydrolase Regulator
  DDV21_RS08255 (DDV21_008255) vicK 1733935..1735293 (-) 1359 WP_116879124.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DDV21_RS08260 (DDV21_008260) vicR 1735286..1735996 (-) 711 WP_116879125.1 response regulator YycF Regulator
  DDV21_RS08265 (DDV21_008265) - 1736377..1737141 (+) 765 WP_116879126.1 amino acid ABC transporter ATP-binding protein -
  DDV21_RS08270 (DDV21_008270) - 1737152..1737973 (+) 822 WP_116879127.1 transporter substrate-binding domain-containing protein -
  DDV21_RS08275 (DDV21_008275) - 1738533..1739237 (+) 705 WP_116878996.1 amino acid ABC transporter permease -
  DDV21_RS08280 (DDV21_008280) - 1739430..1740080 (+) 651 WP_116878997.1 amino acid ABC transporter permease -
  DDV21_RS08285 (DDV21_008285) - 1740252..1740848 (-) 597 WP_116878998.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27094.95 Da        Isoelectric Point: 4.7730

>NTDB_id=310846 DDV21_RS08260 WP_116879125.1 1735286..1735996(-) (vicR) [Streptococcus chenjunshii strain Z15]
MKKILIVDDEKPISDIIKFNLAKEGYDTVTAFDGREALIKYEEEHPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIETAVAEENASAETPEITIGELQILPDAFVALKRGSEVE
LTHREFELLHHLATHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=310846 DDV21_RS08260 WP_116879125.1 1735286..1735996(-) (vicR) [Streptococcus chenjunshii strain Z15]
ATGAAGAAAATTCTTATCGTAGATGACGAGAAACCAATCTCTGATATTATCAAATTTAATTTAGCTAAAGAAGGTTATGA
TACAGTGACAGCCTTTGACGGCCGTGAAGCACTGATAAAATACGAAGAAGAACATCCAGATTTAATTATTCTCGATTTAA
TGTTGCCTGAACTAGATGGACTTGAAGTTGCCAAGGAAGTACGGAAAACCAGTCATATTCCTATTATTATGCTTTCTGCA
AAAGACAGTGAATTTGATAAGGTAATCGGTCTTGAAATCGGAGCAGATGATTATGTAACAAAACCTTTTTCAAATCGTGA
ACTGTTGGCACGGGTCAAAGCCCATTTGCGTCGGACAGAAAATATTGAAACTGCAGTCGCAGAGGAGAATGCGTCAGCTG
AAACACCGGAAATCACTATCGGCGAGCTGCAGATTTTGCCGGATGCTTTTGTTGCTTTGAAACGCGGCTCAGAGGTTGAA
CTGACTCACCGTGAATTTGAACTGCTGCACCATTTGGCAACACATATCGGTCAAGTGATGACAAGGGAGCATTTGCTTGA
AACTGTCTGGGGCTATGATTATTTTGGTGATGTCAGAACCGTTGATGTCACTGTCAGACGTTTACGTGAGAAAATTGAGG
ATACTCCCAGTCGGCCGGAATATATTTTGACCAGACGCGGTGTCGGATATTATATGAAATCTTATGAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372KIT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

93.644

100

0.936
  micA Streptococcus pneumoniae Cp1015

77.35

99.153

0.767
  covR Streptococcus salivarius strain HSISS4

46.352

98.729

0.458
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.494

98.729

0.449
  scnR Streptococcus mutans UA159

37.179

99.153

0.369

Multiple sequence alignment