Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   DDV21_RS08255 Genome accession   NZ_CP031733
Coordinates   1733935..1735293 (-) Length   452 a.a.
NCBI ID   WP_116879124.1    Uniprot ID   A0A372KJU8
Organism   Streptococcus chenjunshii strain Z15     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1728935..1740293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS08245 (DDV21_008245) rnc 1731813..1732499 (-) 687 WP_116878190.1 ribonuclease III -
  DDV21_RS08250 (DDV21_008250) vicX 1733123..1733932 (-) 810 WP_116879123.1 MBL fold metallo-hydrolase Regulator
  DDV21_RS08255 (DDV21_008255) vicK 1733935..1735293 (-) 1359 WP_116879124.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DDV21_RS08260 (DDV21_008260) vicR 1735286..1735996 (-) 711 WP_116879125.1 response regulator YycF Regulator
  DDV21_RS08265 (DDV21_008265) - 1736377..1737141 (+) 765 WP_116879126.1 amino acid ABC transporter ATP-binding protein -
  DDV21_RS08270 (DDV21_008270) - 1737152..1737973 (+) 822 WP_116879127.1 transporter substrate-binding domain-containing protein -
  DDV21_RS08275 (DDV21_008275) - 1738533..1739237 (+) 705 WP_116878996.1 amino acid ABC transporter permease -
  DDV21_RS08280 (DDV21_008280) - 1739430..1740080 (+) 651 WP_116878997.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 51595.78 Da        Isoelectric Point: 4.7261

>NTDB_id=310845 DDV21_RS08255 WP_116879124.1 1733935..1735293(-) (vicK) [Streptococcus chenjunshii strain Z15]
MNNDIIGNLNTFELAILILLVFVAFYFIHLAIRDFRFSKNIRMLSDKVRNLITGNYTGDIKVTGDADMRELAEHLNDLSK
VFQLTHENLAQEKNRLASILAYMTDGVLATDRTGQITMINEMAQKQLNLKREEALQLNIVDILGQDSPYSYSDLVAKTPE
LVLDQRNEFDEFITLRIRFALNRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALK
EDIAPSFIKVSLDETNRMMRMISDLLNLSRIDNQVTQLDIEMINFTAFMTSVLDRFDHIKNQESFGGKYYEIVRDYPNVP
VWIEIDTDKMTQVLDNIINNAIKYSPDGANITISMKTTDTQLIIAVADEGLGIPKKDLPLIFDRFYRVDKARSRAQGGTG
LGLAIAKEIIKQHQGFIWAKSEYGKGSTFTIVLPYEKSASTSIYEEWEEDSD

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=310845 DDV21_RS08255 WP_116879124.1 1733935..1735293(-) (vicK) [Streptococcus chenjunshii strain Z15]
ATGAATAATGATATTATAGGCAATCTAAACACTTTTGAACTTGCTATTCTAATCCTGCTTGTTTTTGTGGCCTTTTACTT
TATCCATCTGGCTATTCGCGACTTTCGTTTTTCTAAGAATATACGTATGCTCAGTGATAAAGTCAGGAATTTAATTACTG
GCAATTACACGGGGGATATCAAAGTCACAGGTGATGCCGATATGCGGGAACTGGCCGAACACCTCAATGATCTGTCTAAA
GTTTTTCAGCTCACCCATGAAAATCTGGCTCAGGAAAAAAACCGGCTGGCAAGTATTCTTGCTTATATGACTGACGGAGT
GCTGGCTACTGACCGAACCGGGCAGATTACTATGATCAACGAGATGGCACAAAAACAGCTGAATTTAAAGCGTGAAGAGG
CATTACAGCTGAATATTGTGGATATTTTAGGTCAAGACAGTCCCTACAGCTACAGCGATTTAGTAGCAAAAACGCCAGAG
CTTGTTTTGGATCAGCGCAATGAATTTGATGAATTTATTACTTTGCGTATCCGCTTTGCCCTCAATCGGAGAGAAAGCGG
CTTTATCTCAGGTCTGGTAGCTGTTTTGCACGATACCACAGAGCAGGAAAAAGAAGAACGCGAACGGCGCTTGTTTGTTT
CAAATGTCAGTCATGAGCTGCGGACGCCTTTAACATCTGTAAAATCCTATCTGGAGGCTTTGGATGAGGGGGCACTCAAA
GAGGATATCGCTCCCAGTTTCATCAAAGTTTCTTTGGATGAGACCAACCGGATGATGCGGATGATTTCTGATTTGCTGAA
TTTGTCCAGAATTGATAATCAAGTTACTCAGTTGGATATCGAAATGATTAATTTCACGGCCTTTATGACATCGGTGCTGG
ATCGTTTTGACCATATTAAAAATCAAGAGAGCTTTGGCGGGAAGTATTATGAGATTGTCCGTGATTATCCCAATGTACCT
GTTTGGATTGAAATTGATACAGATAAAATGACTCAGGTGCTGGATAATATTATCAACAATGCTATAAAATATTCTCCGGA
CGGGGCCAATATTACAATCAGTATGAAAACAACAGACACCCAGCTGATTATCGCAGTTGCTGATGAAGGGCTGGGTATCC
CTAAAAAAGATCTGCCCTTAATTTTTGACCGTTTTTACCGCGTCGATAAGGCTAGAAGCAGGGCTCAAGGAGGAACAGGG
CTGGGTCTGGCTATTGCTAAGGAAATCATTAAGCAGCATCAAGGCTTTATATGGGCCAAGAGTGAATACGGGAAAGGTTC
GACCTTTACCATTGTTTTGCCTTATGAAAAGTCTGCTAGTACTAGTATTTATGAAGAGTGGGAGGAAGACAGCGACTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(95-181)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(326-436)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372KJU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

75.243

91.15

0.686
  micB Streptococcus pneumoniae Cp1015

65.33

93.805

0.613

Multiple sequence alignment