Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   DDV21_RS06350 Genome accession   NZ_CP031733
Coordinates   1298747..1299421 (-) Length   224 a.a.
NCBI ID   WP_116877097.1    Uniprot ID   -
Organism   Streptococcus chenjunshii strain Z15     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1293747..1304421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS06325 (DDV21_006325) - 1294032..1295309 (-) 1278 WP_116877102.1 pyrimidine-nucleoside phosphorylase -
  DDV21_RS06330 (DDV21_006330) - 1295306..1295887 (-) 582 WP_116877101.1 class I SAM-dependent methyltransferase -
  DDV21_RS06335 (DDV21_006335) coaA 1296001..1296921 (+) 921 WP_116877100.1 type I pantothenate kinase -
  DDV21_RS06340 (DDV21_006340) rpsT 1297036..1297287 (+) 252 WP_116877099.1 30S ribosomal protein S20 -
  DDV21_RS06345 (DDV21_006345) ciaH 1297426..1298757 (-) 1332 WP_116877098.1 HAMP domain-containing sensor histidine kinase Regulator
  DDV21_RS06350 (DDV21_006350) ciaR 1298747..1299421 (-) 675 WP_116877097.1 response regulator transcription factor Regulator
  DDV21_RS06355 (DDV21_006355) - 1299977..1302520 (-) 2544 WP_116877096.1 M1 family metallopeptidase -
  DDV21_RS06360 (DDV21_006360) phoU 1302563..1303216 (-) 654 WP_116877095.1 phosphate signaling complex protein PhoU -
  DDV21_RS06365 (DDV21_006365) pstB 1303226..1303984 (-) 759 WP_116877094.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25479.29 Da        Isoelectric Point: 4.4535

>NTDB_id=310837 DDV21_RS06350 WP_116877097.1 1298747..1299421(-) (ciaR) [Streptococcus chenjunshii strain Z15]
MIKILLVEDDLSLSNSVFDFLDDFADVMQVFDGEEGLYEAESGVYDLILLDLMLPEKNGFQVLKELRDKGITTPVLIMTA
KEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNEKILSYGELSVDTSTNTTLVQGQEVELLGKEFDLLVY
FLQNKNVILPKSQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTRFADHLQTLRSVGYILKNAE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=310837 DDV21_RS06350 WP_116877097.1 1298747..1299421(-) (ciaR) [Streptococcus chenjunshii strain Z15]
ATGATTAAGATATTGCTTGTGGAAGATGATTTGAGCTTGTCTAACTCGGTTTTTGACTTTCTGGATGATTTTGCGGATGT
GATGCAGGTTTTCGATGGAGAAGAAGGTCTTTATGAGGCTGAGAGTGGTGTTTATGATCTTATTTTGCTGGATTTGATGC
TGCCGGAAAAAAATGGTTTCCAAGTGTTAAAAGAACTGAGGGATAAGGGAATCACAACTCCAGTTCTTATTATGACCGCT
AAAGAAGGCCTTGATGATAAGGGGCATGGATTTGAACTTGGAGCCGATGACTATCTGACAAAACCTTTTTATCTTGAGGA
ACTAAAAATGCGAATTCAAGCACTTTTAAAACGTTCGGGAAAGTTTAATGAAAAGATTCTTTCTTACGGAGAACTTTCAG
TGGATACATCGACAAATACGACTCTTGTTCAGGGACAGGAAGTAGAGCTGCTTGGTAAAGAGTTTGATTTGCTGGTTTAT
TTTCTGCAAAATAAGAATGTTATCCTGCCTAAATCACAGATTTTCGATCGCATCTGGGGATTTGACAGCGATACAACCAT
TTCAGTTGTAGAAGTGTATGTTTCAAAAATTCGGAAAAAGTTAAAGGGAACACGTTTTGCTGATCATTTGCAGACACTGC
GCAGTGTGGGGTATATTCTGAAAAATGCTGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

91.928

99.554

0.915
  ciaR Streptococcus pneumoniae Rx1

87.5

100

0.875
  ciaR Streptococcus pneumoniae D39

87.5

100

0.875
  ciaR Streptococcus pneumoniae R6

87.5

100

0.875
  ciaR Streptococcus pneumoniae TIGR4

87.5

100

0.875
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.222

100

0.384
  covR Streptococcus salivarius strain HSISS4

35.841

100

0.362

Multiple sequence alignment