Detailed information NTG0310763

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: D0B88_RS06415
• Genome accession: NZ_CP031727
• Coordinates: 1524725..1526755 (+)
• Length: 676 a.a.
• NCBI ID: WP_225318562.1
• Uniprot ID: -
• Organism: Cellvibrio sp. KY-YJ-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1514550..1524717	1524725..1526755	flank	8

Gene organization within MGE regions

Location: 1514550..1526755

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0B88_RS06365 (D0B88_06425)	-	1514550..1515098 (-)	549	WP_151055960.1	SPOR domain-containing protein	-
D0B88_RS06370 (D0B88_06430)	-	1515173..1517401 (-)	2229	WP_151055962.1	primosomal protein N'	-
D0B88_RS06375 (D0B88_06435)	-	1517686..1517973 (+)	288	WP_225318561.1	high-potential iron-sulfur protein	-
D0B88_RS06380 (D0B88_06440)	rpmE	1518149..1518373 (+)	225	WP_007645273.1	50S ribosomal protein L31	-
D0B88_RS06385 (D0B88_06445)	-	1518378..1519211 (+)	834	WP_151055964.1	thermonuclease family protein	-
D0B88_RS06390 (D0B88_06450)	-	1519212..1521677 (-)	2466	WP_151055966.1	penicillin-binding protein 1A	-
D0B88_RS06395 (D0B88_06455)	pilM	1521781..1522848 (+)	1068	WP_007645265.1	pilus assembly protein PilM	Machinery gene
D0B88_RS06400 (D0B88_06460)	-	1522848..1523435 (+)	588	WP_151055968.1	PilN domain-containing protein	-
D0B88_RS06405 (D0B88_06465)	-	1523435..1524052 (+)	618	WP_007645262.1	type 4a pilus biogenesis protein PilO	-
D0B88_RS06410 (D0B88_06470)	-	1524049..1524573 (+)	525	WP_007645261.1	pilus assembly protein PilP	-
D0B88_RS06415 (D0B88_06475)	pilQ	1524725..1526755 (+)	2031	WP_225318562.1	type IV pilus secretin PilQ family protein	Machinery gene

Sequence

Protein

• Length: 676 a.a.
• Molecular weight: 73597.25 Da
• Isoelectric Point: 4.5869

>NTDB_id=310763 D0B88_RS06415 WP_225318562.1 1524725..1526755(+) (pilQ) [Cellvibrio sp. KY-YJ-3]
MAFDSPPQMPQGYTIEKPARIVLDFPDAISALKERRYPLAVDNGQSAMVLTSDGRTRLILNLNALAPYTTRTDGNSFIVE
VGAAKAADAQKSIRPSVEIAQKSGFKEADPVANQNRITNVDFRRGTAGEGRIIISLSNPKVAADMVGTGAGVRLTFKDAW
LPPELRRRLDVVDFATPVSLVSAGQEGESAVLNIAAGGDFDYLAYQTDNEYVVSIKPLTEQEKLEKKKDFEYTGEKLSLD
FQDIEVRAVLQIIADFTDLNLVASDTVQGRITLRLQNVPWDQALEMVLKNKGLDKRQVGNVLMVAPAAEIAERERQEITT
KKQLEELAPLRTEYIRVRYANAKEMFELFRGEGGGGGSGGGSGGSRATGSVLSERGQGVVDERTNSIIITDTAERIEAFK
RLVDQIDIPIRQVMIEARIVIANTDFQRELGVRWGGIGYNEKPGSRIIDFAGSREGLDDTDGTSPRDWFVSDPADGNSFD
LNEADVVDLAVANPYASAAIGVLTDNTYLDLELSALENSGYAEIVSQPKVITSDKQLAIIKSGKEIGYQETAPSGGTTTG
FREAVLKLEVTPQITPDNRIIMDLIVWKDSIGANTPSGVPTVDITRLETKVLVNNGQTVVLGGVFSLEGTKGENKVPVLG
DIPYLGRLFKKTTDNQFKTELLIFVTPKLMSDTLSN

Nucleotide

• Length: 2031 bp

>NTDB_id=310763 D0B88_RS06415 WP_225318562.1 1524725..1526755(+) (pilQ) [Cellvibrio sp. KY-YJ-3]
ATGGCATTTGATTCTCCGCCTCAAATGCCACAGGGCTACACTATTGAAAAGCCTGCACGTATTGTACTCGATTTTCCTGA
TGCCATTAGTGCATTAAAGGAGCGCCGTTATCCCTTGGCGGTCGATAATGGCCAAAGTGCTATGGTGCTGACCAGCGATG
GGCGTACGCGCTTGATTTTAAATCTCAATGCGCTGGCTCCCTATACCACTCGCACAGATGGCAATAGTTTTATCGTCGAA
GTTGGCGCTGCAAAGGCTGCTGACGCACAAAAATCTATTCGTCCATCTGTTGAGATAGCGCAGAAAAGTGGGTTCAAAGA
GGCAGATCCCGTAGCTAACCAAAACCGGATTACCAATGTTGATTTCCGTCGTGGTACTGCAGGCGAAGGGCGAATAATTA
TTTCACTCTCTAACCCTAAAGTGGCTGCTGATATGGTTGGAACTGGAGCGGGAGTGCGTTTGACATTCAAGGATGCATGG
CTTCCTCCAGAGCTGCGACGTCGTCTGGATGTGGTGGATTTTGCTACTCCAGTGTCTTTGGTGAGTGCTGGCCAAGAAGG
CGAGAGCGCTGTTTTAAATATTGCGGCAGGCGGAGACTTCGATTATTTGGCTTATCAGACGGATAACGAATATGTAGTTA
GCATTAAACCGTTAACCGAGCAAGAAAAGCTTGAGAAGAAGAAAGATTTTGAATACACGGGCGAAAAATTATCTTTGGAT
TTTCAAGATATTGAAGTTCGTGCTGTATTGCAGATTATTGCTGACTTTACTGATTTGAACCTGGTTGCCAGCGATACCGT
GCAAGGGCGAATTACTTTGCGCTTACAAAATGTACCTTGGGATCAAGCCTTGGAGATGGTTCTTAAAAACAAAGGTCTTG
ATAAACGTCAGGTTGGTAATGTGCTAATGGTTGCACCTGCCGCAGAAATTGCAGAGCGTGAGCGTCAGGAAATTACTACC
AAGAAGCAACTGGAAGAGCTTGCACCACTCCGCACGGAATACATTCGTGTGCGCTATGCCAATGCGAAGGAGATGTTTGA
ACTATTTCGCGGGGAAGGCGGTGGCGGTGGTTCTGGTGGCGGTAGTGGTGGTAGCCGGGCAACGGGCAGCGTACTTTCAG
AGCGTGGCCAAGGTGTTGTTGATGAGCGAACCAACTCAATTATCATTACTGACACCGCAGAGCGTATTGAAGCATTTAAG
CGTTTGGTGGATCAAATTGATATTCCAATTCGCCAGGTAATGATTGAGGCAAGAATTGTTATCGCTAACACTGATTTTCA
GCGCGAACTTGGCGTTCGCTGGGGCGGCATTGGATACAATGAAAAACCTGGCAGCAGAATTATTGACTTTGCCGGATCAA
GAGAGGGACTAGATGATACTGATGGCACCAGCCCACGTGACTGGTTCGTTTCTGATCCTGCTGATGGCAATTCATTCGAT
TTAAATGAAGCCGATGTTGTCGATCTTGCAGTTGCTAATCCCTATGCCTCTGCTGCAATTGGTGTACTGACTGATAACAC
CTATCTTGATTTAGAGTTGAGTGCTTTGGAAAATTCGGGCTACGCAGAAATTGTGTCGCAGCCAAAAGTTATCACCAGTG
ATAAACAATTAGCGATTATTAAGTCAGGTAAGGAAATTGGATACCAAGAAACTGCCCCTAGTGGTGGTACTACAACTGGG
TTCCGTGAAGCAGTATTGAAGTTAGAAGTTACACCGCAGATTACACCTGACAATCGCATAATTATGGATTTGATTGTGTG
GAAAGATTCTATAGGAGCGAATACTCCATCTGGTGTGCCTACGGTTGATATCACTCGCTTAGAGACTAAAGTTTTGGTTA
ACAATGGTCAAACAGTTGTACTCGGCGGTGTATTCTCCTTAGAGGGAACCAAAGGTGAGAATAAGGTTCCGGTGCTAGGT
GATATACCCTACTTGGGGCGCCTATTTAAGAAGACCACTGATAATCAATTCAAAACTGAACTGTTGATTTTTGTTACCCC
CAAACTGATGTCGGATACTCTGTCAAACTGA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (333-412)

• Bacterial type II and III secretion system protein (Secretin) (515-670)

• Secretin and TonB N terminus short domain (STN) (260-306)

• AMIN domain (AMIN) (7-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Pseudomonas aeruginosa PAK	49.415	100	0.5
pilQ	Acinetobacter baumannii strain A118	40.057	100	0.417
pilQ	Acinetobacter baumannii D1279779	40.057	100	0.417
comQ	Acinetobacter baylyi ADP1	40.698	100	0.414
pilQ	Legionella pneumophila strain Lp02	36.788	100	0.373
pilQ	Legionella pneumophila strain ERS1305867	36.788	100	0.373