Detailed information
Bioinformatically predicted
Overview
| Name | pilM | Type | Machinery gene |
| Locus tag | D0B88_RS06395 | Genome accession | NZ_CP031727 |
| Coordinates | 1521781..1522848 (+) | Length | 355 a.a. |
| NCBI ID | WP_007645265.1 | Uniprot ID | - |
| Organism | Cellvibrio sp. KY-YJ-3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1514550..1524717 | 1521781..1522848 | within | 0 |
Gene organization within MGE regions
Location: 1514550..1524717
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0B88_RS06365 (D0B88_06425) | - | 1514550..1515098 (-) | 549 | WP_151055960.1 | SPOR domain-containing protein | - |
| D0B88_RS06370 (D0B88_06430) | - | 1515173..1517401 (-) | 2229 | WP_151055962.1 | primosomal protein N' | - |
| D0B88_RS06375 (D0B88_06435) | - | 1517686..1517973 (+) | 288 | WP_225318561.1 | high-potential iron-sulfur protein | - |
| D0B88_RS06380 (D0B88_06440) | rpmE | 1518149..1518373 (+) | 225 | WP_007645273.1 | 50S ribosomal protein L31 | - |
| D0B88_RS06385 (D0B88_06445) | - | 1518378..1519211 (+) | 834 | WP_151055964.1 | thermonuclease family protein | - |
| D0B88_RS06390 (D0B88_06450) | - | 1519212..1521677 (-) | 2466 | WP_151055966.1 | penicillin-binding protein 1A | - |
| D0B88_RS06395 (D0B88_06455) | pilM | 1521781..1522848 (+) | 1068 | WP_007645265.1 | pilus assembly protein PilM | Machinery gene |
| D0B88_RS06400 (D0B88_06460) | - | 1522848..1523435 (+) | 588 | WP_151055968.1 | PilN domain-containing protein | - |
| D0B88_RS06405 (D0B88_06465) | - | 1523435..1524052 (+) | 618 | WP_007645262.1 | type 4a pilus biogenesis protein PilO | - |
| D0B88_RS06410 (D0B88_06470) | - | 1524049..1524573 (+) | 525 | WP_007645261.1 | pilus assembly protein PilP | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 38837.58 Da Isoelectric Point: 4.3449
>NTDB_id=310762 D0B88_RS06395 WP_007645265.1 1521781..1522848(+) (pilM) [Cellvibrio sp. KY-YJ-3]
MGILSFLEKKAKPVIGLDISSTSVKLLELNRIGDRYRVESYTVKALPPNAVVEKNIADPAAVAEVIRSMVKQSKTKLKHA
AVAVAGSAVITKMIDMPMDLSDDAMESQIAAEADQYIPFPLEEVMLDFEVQGISPRNPDQVEVLLAACRRENVDVRQQVL
NDADLVAEKIDIEAYCMERAFELIAEQLEDQEGQVVAIIDIGATMTTLSVLVDGKTVYTREQLFGGRQLTEEIQRRYGLS
REEAGLAKKQGGLPDDYEMEVLAPFKDAVVQQVTRSLQFFFSASQYNDVDYIILAGGVASLEGLVGLIEEKLGTQTVVAN
PFARMSVSSRVNAVSLANDAPALMIVTGLAMRSFD
MGILSFLEKKAKPVIGLDISSTSVKLLELNRIGDRYRVESYTVKALPPNAVVEKNIADPAAVAEVIRSMVKQSKTKLKHA
AVAVAGSAVITKMIDMPMDLSDDAMESQIAAEADQYIPFPLEEVMLDFEVQGISPRNPDQVEVLLAACRRENVDVRQQVL
NDADLVAEKIDIEAYCMERAFELIAEQLEDQEGQVVAIIDIGATMTTLSVLVDGKTVYTREQLFGGRQLTEEIQRRYGLS
REEAGLAKKQGGLPDDYEMEVLAPFKDAVVQQVTRSLQFFFSASQYNDVDYIILAGGVASLEGLVGLIEEKLGTQTVVAN
PFARMSVSSRVNAVSLANDAPALMIVTGLAMRSFD
Nucleotide
Download Length: 1068 bp
>NTDB_id=310762 D0B88_RS06395 WP_007645265.1 1521781..1522848(+) (pilM) [Cellvibrio sp. KY-YJ-3]
ATGGGCATTTTAAGTTTCCTAGAAAAGAAGGCAAAACCGGTAATCGGGTTGGACATCAGTTCAACTTCGGTTAAATTGCT
TGAACTCAATCGCATCGGCGATCGCTATCGCGTTGAGTCCTATACCGTAAAAGCACTTCCTCCAAATGCGGTGGTTGAGA
AAAACATCGCCGACCCTGCCGCAGTTGCAGAGGTCATTCGCTCTATGGTCAAACAGTCCAAAACCAAGTTGAAGCACGCC
GCCGTTGCGGTAGCAGGCTCGGCGGTGATCACCAAAATGATCGATATGCCGATGGACTTGAGTGATGATGCCATGGAGAG
CCAAATTGCGGCTGAGGCAGATCAATATATTCCTTTCCCCCTTGAAGAAGTGATGCTCGACTTTGAGGTTCAGGGCATAT
CTCCGCGCAACCCGGATCAAGTAGAAGTTTTGTTGGCTGCTTGCCGTCGTGAAAATGTCGATGTGCGCCAGCAGGTTTTG
AATGATGCAGATTTGGTTGCTGAAAAAATCGACATTGAAGCCTACTGCATGGAGCGCGCCTTTGAGTTGATCGCCGAACA
GCTTGAGGATCAGGAGGGACAGGTTGTGGCGATTATCGATATAGGCGCCACCATGACCACCTTGAGCGTGCTGGTTGATG
GAAAAACGGTTTACACCCGTGAACAGCTTTTTGGTGGCCGCCAGCTTACTGAAGAGATACAGCGTCGCTATGGTTTGTCC
CGCGAAGAAGCTGGTCTCGCCAAAAAACAGGGCGGATTGCCGGATGATTATGAAATGGAAGTTTTGGCTCCCTTCAAAGA
TGCCGTTGTGCAACAAGTTACTCGCTCACTTCAATTCTTTTTCTCTGCCAGCCAATACAACGATGTCGATTACATCATTC
TTGCGGGAGGTGTTGCTTCCCTGGAAGGGTTGGTCGGGTTGATAGAAGAAAAGCTGGGAACACAAACTGTGGTTGCTAAT
CCTTTTGCCAGAATGTCAGTGTCCTCCAGAGTCAATGCAGTGTCTTTGGCTAATGATGCGCCTGCTCTGATGATAGTTAC
CGGGCTGGCGATGAGGAGTTTTGACTAA
ATGGGCATTTTAAGTTTCCTAGAAAAGAAGGCAAAACCGGTAATCGGGTTGGACATCAGTTCAACTTCGGTTAAATTGCT
TGAACTCAATCGCATCGGCGATCGCTATCGCGTTGAGTCCTATACCGTAAAAGCACTTCCTCCAAATGCGGTGGTTGAGA
AAAACATCGCCGACCCTGCCGCAGTTGCAGAGGTCATTCGCTCTATGGTCAAACAGTCCAAAACCAAGTTGAAGCACGCC
GCCGTTGCGGTAGCAGGCTCGGCGGTGATCACCAAAATGATCGATATGCCGATGGACTTGAGTGATGATGCCATGGAGAG
CCAAATTGCGGCTGAGGCAGATCAATATATTCCTTTCCCCCTTGAAGAAGTGATGCTCGACTTTGAGGTTCAGGGCATAT
CTCCGCGCAACCCGGATCAAGTAGAAGTTTTGTTGGCTGCTTGCCGTCGTGAAAATGTCGATGTGCGCCAGCAGGTTTTG
AATGATGCAGATTTGGTTGCTGAAAAAATCGACATTGAAGCCTACTGCATGGAGCGCGCCTTTGAGTTGATCGCCGAACA
GCTTGAGGATCAGGAGGGACAGGTTGTGGCGATTATCGATATAGGCGCCACCATGACCACCTTGAGCGTGCTGGTTGATG
GAAAAACGGTTTACACCCGTGAACAGCTTTTTGGTGGCCGCCAGCTTACTGAAGAGATACAGCGTCGCTATGGTTTGTCC
CGCGAAGAAGCTGGTCTCGCCAAAAAACAGGGCGGATTGCCGGATGATTATGAAATGGAAGTTTTGGCTCCCTTCAAAGA
TGCCGTTGTGCAACAAGTTACTCGCTCACTTCAATTCTTTTTCTCTGCCAGCCAATACAACGATGTCGATTACATCATTC
TTGCGGGAGGTGTTGCTTCCCTGGAAGGGTTGGTCGGGTTGATAGAAGAAAAGCTGGGAACACAAACTGTGGTTGCTAAT
CCTTTTGCCAGAATGTCAGTGTCCTCCAGAGTCAATGCAGTGTCTTTGGCTAATGATGCGCCTGCTCTGATGATAGTTAC
CGGGCTGGCGATGAGGAGTTTTGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilM | Acinetobacter baumannii D1279779 |
54.391 |
99.437 |
0.541 |
| comM | Acinetobacter nosocomialis M2 |
54.108 |
99.437 |
0.538 |
| comM | Acinetobacter baylyi ADP1 |
51.275 |
99.437 |
0.51 |
| pilM | Legionella pneumophila strain ERS1305867 |
42.373 |
99.718 |
0.423 |