Detailed information NTG0310480

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: DZA53_RS18155
• Genome accession: NZ_CP031697
• Coordinates: 3737824..3739083 (+)
• Length: 419 a.a.
• NCBI ID: WP_011408067.1
• Uniprot ID: A0A0K0GIM7
• Organism: Xanthomonas oryzae pv. oryzae strain ICMP3125
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3733185..3743471	3737824..3739083	within	0

Gene organization within MGE regions

Location: 3733185..3743471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DZA53_RS26020 (DZA53_18130)	-	3733185..3734710 (-)	1526	Protein_3291	hypothetical protein	-
DZA53_RS18140 (DZA53_18135)	-	3734680..3735309 (-)	630	WP_011408070.1	hypothetical protein	-
DZA53_RS18145 (DZA53_18140)	-	3735320..3736909 (-)	1590	WP_011408069.1	phosphoethanolamine transferase	-
DZA53_RS18150 (DZA53_18145)	pilA2	3737044..3737469 (-)	426	WP_011408068.1	pilin	Machinery gene
DZA53_RS18155 (DZA53_18150)	pilC	3737824..3739083 (+)	1260	WP_011408067.1	type II secretion system F family protein	Machinery gene
DZA53_RS18160 (DZA53_18155)	-	3739090..3739953 (+)	864	WP_011258358.1	A24 family peptidase	-
DZA53_RS18165 (DZA53_18160)	coaE	3739967..3740575 (+)	609	WP_011258357.1	dephospho-CoA kinase	-
DZA53_RS18170 (DZA53_18165)	-	3740646..3741392 (+)	747	Protein_3298	IS701 family transposase	-
DZA53_RS18175 (DZA53_18170)	-	3741434..3742232 (+)	799	WP_094187777.1	IS5 family transposase	-
DZA53_RS18180 (DZA53_18175)	-	3742242..3742817 (+)	576	Protein_3300	IS701-like element ISXo15 family transposase	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46058.56 Da
• Isoelectric Point: 10.2301

>NTDB_id=310480 DZA53_RS18155 WP_011408067.1 3737824..3739083(+) (pilC) [Xanthomonas oryzae pv. oryzae strain ICMP3125]
MSVARSAIKKQPVDRNTSMLQTFIWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGGAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLIVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=310480 DZA53_RS18155 WP_011408067.1 3737824..3739083(+) (pilC) [Xanthomonas oryzae pv. oryzae strain ICMP3125]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCATGCTGCAGACCTTCATTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGGGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTACCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCTCTGAAGGGCAAGATCAAAAAGGCACTGTTCTACCC
TGCCATGGTGGTTGCAGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATAGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGAGGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

3D structure

• AlphaFold DB: A0A0K0GIM7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	53.202	96.897	0.516
pilC	Pseudomonas stutzeri DSM 10701	53.283	94.511	0.504
pilC	Acinetobacter baylyi ADP1	50.37	96.659	0.487
pilC	Acinetobacter baumannii D1279779	50.37	96.659	0.487
pilG	Neisseria gonorrhoeae MS11	43.921	96.181	0.422
pilG	Neisseria meningitidis 44/76-A	43.424	96.181	0.418
pilC	Vibrio cholerae strain A1552	40.75	95.465	0.389
pilC	Vibrio campbellii strain DS40M4	39	95.465	0.372