Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CH613_RS03680 | Genome accession | NZ_CP031684 |
| Coordinates | 711720..712169 (+) | Length | 149 a.a. |
| NCBI ID | WP_005686726.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P652-8881 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 706720..717169
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH613_RS03660 (CH613_03660) | rsmE | 707184..707921 (-) | 738 | WP_005686736.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| CH613_RS03665 (CH613_03665) | lnt | 707971..709500 (-) | 1530 | WP_074032781.1 | apolipoprotein N-acyltransferase | - |
| CH613_RS03670 (CH613_03670) | corC | 709523..710422 (-) | 900 | WP_011961742.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| CH613_RS03675 (CH613_03675) | ampD | 711045..711605 (-) | 561 | WP_005648974.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| CH613_RS03680 (CH613_03680) | pilA | 711720..712169 (+) | 450 | WP_005686726.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CH613_RS03685 (CH613_03685) | pilB | 712166..713563 (+) | 1398 | WP_011961745.1 | GspE/PulE family protein | Machinery gene |
| CH613_RS03690 (CH613_03690) | - | 713560..714775 (+) | 1216 | Protein_704 | type II secretion system F family protein | - |
| CH613_RS03695 (CH613_03695) | pilD | 714772..715464 (+) | 693 | WP_005686720.1 | A24 family peptidase | Machinery gene |
| CH613_RS03700 (CH613_03700) | rho | 715518..716780 (-) | 1263 | WP_005648966.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15542.90 Da Isoelectric Point: 8.4607
>NTDB_id=309992 CH613_RS03680 WP_005686726.1 711720..712169(+) (pilA) [Haemophilus influenzae strain P652-8881]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNEATKCTGGKNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQASGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNEATKCTGGKNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQASGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=309992 CH613_RS03680 WP_005686726.1 711720..712169(+) (pilA) [Haemophilus influenzae strain P652-8881]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATCCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAGCAACAAAGTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCCAGTGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATCCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAGCAACAAAGTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCCAGTGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
97.987 |
100 |
0.98 |
| pilA | Haemophilus influenzae Rd KW20 |
91.275 |
100 |
0.913 |
| pilA | Glaesserella parasuis strain SC1401 |
54.362 |
100 |
0.544 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.446 |
93.289 |
0.396 |
| pilA2 | Legionella pneumophila str. Paris |
42.446 |
93.289 |
0.396 |
| pilA | Vibrio campbellii strain DS40M4 |
39.716 |
94.631 |
0.376 |