Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   D7Y56_RS11110 Genome accession   NZ_CP038147
Coordinates   2145818..2146501 (-) Length   227 a.a.
NCBI ID   WP_030122564.1    Uniprot ID   A0ABY9JH64
Organism   Streptomyces sp. S501     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2140818..2151501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS11100 (D7Y56_11100) - 2143288..2144292 (+) 1005 WP_015577141.1 hypothetical protein -
  D7Y56_RS11105 (D7Y56_11105) clpX 2144363..2145661 (-) 1299 WP_014156286.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  D7Y56_RS11110 (D7Y56_11110) clpP 2145818..2146501 (-) 684 WP_030122564.1 ATP-dependent Clp protease proteolytic subunit Regulator
  D7Y56_RS11115 (D7Y56_11115) - 2146569..2147174 (-) 606 WP_030122563.1 ATP-dependent Clp protease proteolytic subunit -
  D7Y56_RS11120 (D7Y56_11120) tig 2147462..2148862 (-) 1401 WP_134665056.1 trigger factor -
  D7Y56_RS11135 (D7Y56_11135) - 2149423..2149770 (-) 348 WP_030122562.1 DUF1330 domain-containing protein -
  D7Y56_RS11140 (D7Y56_11140) - 2150020..2150214 (-) 195 WP_014156281.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24798.19 Da        Isoelectric Point: 4.7914

>NTDB_id=309622 D7Y56_RS11110 WP_030122564.1 2145818..2146501(-) (clpP) [Streptomyces sp. S501]
MVKTHMNNFSGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPLEKISEDIERDKILTADDALAYGLVDQIVSTRKTTAGASV

Nucleotide


Download         Length: 684 bp        

>NTDB_id=309622 D7Y56_RS11110 WP_030122564.1 2145818..2146501(-) (clpP) [Streptomyces sp. S501]
ATGGTGAAGACCCACATGAACAACTTCTCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGTGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTCCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACCGTCTGCATGGGCCAGGCCGCCTCCGCCGCCGCCGTCCTGCTGGCCGCCGGCACCC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGTGTGCTCATCCACCAGCCGTCCTCGCAGACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTCGAGGAGATGCTGGCCAAGCACTCCACCACCCC
GCTGGAGAAGATCAGCGAGGACATCGAGCGCGACAAGATCCTTACGGCCGACGACGCACTCGCGTACGGTCTGGTGGACC
AGATCGTCTCCACCCGTAAGACCACCGCGGGCGCGTCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.7

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

82.819

0.396
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus thermophilus LMG 18311

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMD-9

43.814

85.463

0.374
  clpP Streptococcus mutans UA159

43.299

85.463

0.37
  clpP Streptococcus pyogenes JRS4

43.299

85.463

0.37
  clpP Streptococcus pyogenes MGAS315

43.299

85.463

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37
  clpP Streptococcus pneumoniae Rx1

43.523

85.022

0.37
  clpP Streptococcus pneumoniae D39

43.523

85.022

0.37
  clpP Streptococcus pneumoniae R6

43.523

85.022

0.37
  clpP Streptococcus pneumoniae TIGR4

43.523

85.022

0.37

Multiple sequence alignment