Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   DY471_RS13965 Genome accession   NZ_CP031643
Coordinates   2656505..2657086 (-) Length   193 a.a.
NCBI ID   WP_071728948.1    Uniprot ID   A0A4S4HPB8
Organism   Bacillus anthracis strain MCCC 1A01412     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2651505..2662086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DY471_RS13935 (DY471_13935) - 2651543..2652367 (-) 825 WP_071728950.1 PP2C family serine/threonine-protein phosphatase -
  DY471_RS13940 (DY471_13940) - 2652351..2652836 (-) 486 WP_071728949.1 HIT family protein -
  DY471_RS13945 (DY471_13945) - 2652939..2653112 (-) 174 WP_073524232.1 septum formation initiator -
  DY471_RS13950 (DY471_13950) - 2653396..2654232 (-) 837 WP_001084766.1 proline/glycine betaine ABC transporter permease -
  DY471_RS13955 (DY471_13955) - 2654225..2655430 (-) 1206 WP_000370609.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  DY471_RS13960 (DY471_13960) - 2655602..2656459 (+) 858 WP_062921274.1 glycine betaine ABC transporter substrate-binding protein -
  DY471_RS13965 (DY471_13965) clpP 2656505..2657086 (-) 582 WP_071728948.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  DY471_RS13970 (DY471_13970) - 2657108..2657794 (-) 687 WP_071728947.1 RNA polymerase subunit sigma-70 -
  DY471_RS13975 (DY471_13975) - 2657938..2658258 (+) 321 WP_001125378.1 2Fe-2S iron-sulfur cluster-binding protein -
  DY471_RS13980 (DY471_13980) rpiA 2658263..2658925 (+) 663 WP_071728946.1 ribose 5-phosphate isomerase A -
  DY471_RS13985 (DY471_13985) - 2659033..2659467 (+) 435 WP_071728945.1 GNAT family N-acetyltransferase -
  DY471_RS13990 (DY471_13990) - 2659598..2660965 (-) 1368 WP_071728944.1 lytic polysaccharide monooxygenase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21148.44 Da        Isoelectric Point: 5.3394

>NTDB_id=309339 DY471_RS13965 WP_071728948.1 2656505..2657086(-) (clpP) [Bacillus anthracis strain MCCC 1A01412]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIVIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVAKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=309339 DY471_RS13965 WP_071728948.1 2656505..2657086(-) (clpP) [Bacillus anthracis strain MCCC 1A01412]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
TCGTATTGTTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTATTATTTTTAGAAGCTG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCCATATTAGATACG
ATGAATTTAATTAAACCAGACGTGCAAACGCTATGTATGGGCTTTGCAGCATCATTTGGTGCATTGCTATTATTATCAGG
TGCAAAAGGAAAGCGGTTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCAAAAGGGCAAGCGA
CGGAAATTGAAATCACAGCAAAAAGAATTTTAAAGTTAAAACATGATATTAATAAAATGATTGCAGAAAAAACAGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTTGTTGCGAAAAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S4HPB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.368

98.446

0.663
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

97.927

0.653
  clpP Streptococcus pneumoniae Rx1

55.208

99.482

0.549
  clpP Streptococcus pneumoniae D39

55.208

99.482

0.549
  clpP Streptococcus pneumoniae R6

55.208

99.482

0.549
  clpP Streptococcus pneumoniae TIGR4

55.208

99.482

0.549
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus thermophilus LMG 18311

54.167

99.482

0.539
  clpP Streptococcus thermophilus LMD-9

54.167

99.482

0.539
  clpP Streptococcus mutans UA159

53.439

97.927

0.523
  clpP Lactococcus lactis subsp. cremoris KW2

50.794

97.927

0.497
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

97.927

0.487

Multiple sequence alignment