Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   DZN22_RS03945 Genome accession   NZ_CP031637
Coordinates   767609..767791 (+) Length   60 a.a.
NCBI ID   WP_003056293.1    Uniprot ID   A0A5S4TFM2
Organism   Streptococcus pyogenes strain MGAS10786     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 707724..767791 767609..767791 within 0


Gene organization within MGE regions


Location: 707724..767791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZN22_RS03610 (DZN22_03610) - 707724..708880 (-) 1157 Protein_635 IS3 family transposase -
  DZN22_RS03615 (DZN22_03615) - 708976..710289 (-) 1314 WP_011284932.1 chloride channel protein -
  DZN22_RS03620 (DZN22_03620) nrdF 710264..711223 (-) 960 WP_011017933.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  DZN22_RS03625 (DZN22_03625) nrdE 711556..713715 (-) 2160 WP_002993430.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  DZN22_RS03630 (DZN22_03630) - 713735..713953 (-) 219 WP_002989242.1 redoxin NrdH -
  DZN22_RS03635 (DZN22_03635) - 714346..714609 (+) 264 WP_002984031.1 phosphocarrier protein HPr -
  DZN22_RS03640 (DZN22_03640) ptsP 714614..716347 (+) 1734 WP_002984033.1 phosphoenolpyruvate--protein phosphotransferase -
  DZN22_RS03645 (DZN22_03645) - 716532..717959 (+) 1428 WP_011284931.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  DZN22_RS03650 (DZN22_03650) - 718054..719328 (+) 1275 WP_011284930.1 polysaccharide deacetylase family protein -
  DZN22_RS03655 (DZN22_03655) - 719438..720523 (-) 1086 WP_002989254.1 DEAD/DEAH box helicase -
  DZN22_RS03660 (DZN22_03660) udk 720621..721247 (+) 627 WP_002984060.1 uridine kinase -
  DZN22_RS03665 (DZN22_03665) - 721327..721590 (+) 264 WP_002989257.1 DUF1294 domain-containing protein -
  DZN22_RS03670 (DZN22_03670) - 721643..722452 (-) 810 WP_002992609.1 PrsW family intramembrane metalloprotease -
  DZN22_RS03675 (DZN22_03675) - 722597..723094 (+) 498 WP_009881127.1 GAF domain-containing protein -
  DZN22_RS03680 (DZN22_03680) dnaX 723094..724779 (+) 1686 WP_011284927.1 DNA polymerase III subunit gamma/tau -
  DZN22_RS03685 (DZN22_03685) - 725049..726182 (+) 1134 WP_044564887.1 ISAs1-like element IS1548 family transposase -
  DZN22_RS03690 (DZN22_03690) - 726402..727556 (-) 1155 WP_080277749.1 site-specific integrase -
  DZN22_RS03695 (DZN22_03695) - 727675..728196 (-) 522 WP_002986895.1 hypothetical protein -
  DZN22_RS03700 (DZN22_03700) - 728207..728587 (-) 381 WP_002986894.1 ImmA/IrrE family metallo-endopeptidase -
  DZN22_RS03705 (DZN22_03705) - 728601..728960 (-) 360 WP_011054768.1 helix-turn-helix transcriptional regulator -
  DZN22_RS03710 (DZN22_03710) - 729379..729474 (-) 96 WP_020837683.1 type I toxin-antitoxin system Fst family toxin -
  DZN22_RS03715 (DZN22_03715) - 730109..730300 (+) 192 WP_002986891.1 hypothetical protein -
  DZN22_RS03720 (DZN22_03720) - 730311..731039 (+) 729 WP_002986890.1 phage antirepressor KilAC domain-containing protein -
  DZN22_RS09945 - 731072..731221 (+) 150 WP_002986888.1 hypothetical protein -
  DZN22_RS03725 (DZN22_03725) - 731218..731418 (-) 201 WP_002986887.1 KTSC domain-containing protein -
  DZN22_RS03730 (DZN22_03730) - 731497..731745 (+) 249 WP_023611035.1 hypothetical protein -
  DZN22_RS03735 (DZN22_03735) - 731719..731934 (-) 216 WP_129820700.1 hypothetical protein -
  DZN22_RS03740 (DZN22_03740) - 732041..732352 (+) 312 WP_014411880.1 hypothetical protein -
  DZN22_RS03745 (DZN22_03745) - 732354..732524 (+) 171 WP_023611037.1 hypothetical protein -
  DZN22_RS10250 (DZN22_03750) - 732517..732733 (+) 217 Protein_664 hypothetical protein -
  DZN22_RS03755 (DZN22_03755) - 732730..733116 (+) 387 WP_111694890.1 hypothetical protein -
  DZN22_RS03760 (DZN22_03760) - 733606..733809 (+) 204 WP_023611025.1 hypothetical protein -
  DZN22_RS03765 (DZN22_03765) - 733898..734197 (+) 300 WP_002988708.1 hypothetical protein -
  DZN22_RS03770 (DZN22_03770) - 734197..735354 (+) 1158 WP_023611034.1 DUF2800 domain-containing protein -
  DZN22_RS03775 (DZN22_03775) - 735363..735926 (+) 564 WP_111674646.1 DUF2815 family protein -
  DZN22_RS03780 (DZN22_03780) - 735969..737891 (+) 1923 WP_111674645.1 DNA polymerase -
  DZN22_RS03785 (DZN22_03785) - 737896..740280 (+) 2385 WP_111688312.1 phage/plasmid primase, P4 family -
  DZN22_RS03790 (DZN22_03790) - 740666..740941 (+) 276 WP_129820701.1 VRR-NUC domain-containing protein -
  DZN22_RS03795 (DZN22_03795) - 740938..742260 (+) 1323 WP_111694889.1 SNF2-related protein -
  DZN22_RS09950 - 742261..742431 (+) 171 WP_164972002.1 hypothetical protein -
  DZN22_RS03800 (DZN22_03800) - 742424..742696 (+) 273 WP_011054882.1 hypothetical protein -
  DZN22_RS03805 (DZN22_03805) - 742829..743245 (+) 417 WP_011054881.1 transcriptional regulator -
  DZN22_RS03810 (DZN22_03810) terS 743365..744060 (+) 696 WP_050318691.1 phage terminase small subunit -
  DZN22_RS03815 (DZN22_03815) - 744053..745348 (+) 1296 WP_165363098.1 PBSX family phage terminase large subunit -
  DZN22_RS03820 (DZN22_03820) - 745362..746864 (+) 1503 WP_010922075.1 phage portal protein -
  DZN22_RS03825 (DZN22_03825) - 746869..748347 (+) 1479 WP_111694888.1 phage minor capsid protein -
  DZN22_RS03830 (DZN22_03830) - 748319..748558 (+) 240 WP_002986829.1 hypothetical protein -
  DZN22_RS03835 (DZN22_03835) - 748620..748886 (+) 267 WP_111694887.1 hypothetical protein -
  DZN22_RS03840 (DZN22_03840) - 749012..749626 (+) 615 WP_010922079.1 hypothetical protein -
  DZN22_RS03845 (DZN22_03845) - 749630..750448 (+) 819 WP_111711357.1 N4-gp56 family major capsid protein -
  DZN22_RS03850 (DZN22_03850) - 750502..750918 (+) 417 WP_111694886.1 hypothetical protein -
  DZN22_RS03855 (DZN22_03855) - 750908..751240 (+) 333 WP_010922082.1 minor capsid protein -
  DZN22_RS03860 (DZN22_03860) - 751240..751596 (+) 357 WP_010922083.1 minor capsid protein -
  DZN22_RS03865 (DZN22_03865) - 751593..751991 (+) 399 WP_010922084.1 minor capsid protein -
  DZN22_RS03870 (DZN22_03870) - 751991..752461 (+) 471 WP_011527917.1 major tail shaft protein -
  DZN22_RS03875 (DZN22_03875) - 752514..752948 (+) 435 WP_010922086.1 hypothetical protein -
  DZN22_RS03880 (DZN22_03880) - 752952..753533 (+) 582 WP_010922087.1 bacteriophage Gp15 family protein -
  DZN22_RS03885 (DZN22_03885) - 753523..756783 (+) 3261 WP_129820702.1 tape measure protein -
  DZN22_RS03890 (DZN22_03890) - 756780..757496 (+) 717 WP_111674636.1 distal tail protein Dit -
  DZN22_RS03895 (DZN22_03895) - 757493..759640 (+) 2148 WP_129820703.1 phage tail spike protein -
  DZN22_RS03900 (DZN22_03900) - 759637..760851 (+) 1215 WP_011284843.1 hypothetical protein -
  DZN22_RS03905 (DZN22_03905) - 760853..761167 (+) 315 WP_021340983.1 hypothetical protein -
  DZN22_RS03910 (DZN22_03910) - 761178..763064 (+) 1887 WP_129820704.1 gp58-like family protein -
  DZN22_RS03915 (DZN22_03915) - 763076..763507 (+) 432 WP_002987513.1 DUF1617 family protein -
  DZN22_RS03920 (DZN22_03920) - 763510..764121 (+) 612 WP_129820705.1 DUF1366 domain-containing protein -
  DZN22_RS03925 (DZN22_03925) - 764131..764403 (+) 273 WP_085613962.1 hypothetical protein -
  DZN22_RS03930 (DZN22_03930) - 764400..764627 (+) 228 WP_003058873.1 phage holin -
  DZN22_RS03935 (DZN22_03935) - 764743..765948 (+) 1206 WP_085613963.1 glucosaminidase domain-containing protein -
  DZN22_RS03940 (DZN22_03940) - 766570..767370 (-) 801 WP_021340119.1 DNA/RNA non-specific endonuclease -
  DZN22_RS03945 (DZN22_03945) prx 767609..767791 (+) 183 WP_003056293.1 hypothetical protein Regulator

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6877.91 Da        Isoelectric Point: 4.2840

>NTDB_id=309058 DZN22_RS03945 WP_003056293.1 767609..767791(+) (prx) [Streptococcus pyogenes strain MGAS10786]
MLTYDEFKQAIDHGYITGDTVAIVRKNGQIFDYVLPGEPVKPWEILTEVIVEAVLRELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=309058 DZN22_RS03945 WP_003056293.1 767609..767791(+) (prx) [Streptococcus pyogenes strain MGAS10786]
ATGCTAACATACGACGAATTTAAGCAAGCAATCGACCATGGGTATATCACAGGAGACACAGTAGCGATTGTGCGCAAAAA
CGGACAGATCTTTGATTATGTGTTGCCTGGTGAGCCTGTGAAACCGTGGGAAATTTTGACTGAAGTAATAGTAGAAGCAG
TGCTGAGGGAATTAGACAAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5S4TFM2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

80

100

0.8

  prx Streptococcus pyogenes MGAS315

78.333

100

0.783

  prx Streptococcus pyogenes MGAS8232

73.333

100

0.733

  prx Streptococcus pyogenes MGAS315

73.333

100

0.733

  prx Streptococcus pyogenes MGAS315

73.333

100

0.733

  prx Streptococcus pyogenes MGAS315

82.927

68.333

0.567

  prx Streptococcus pyogenes MGAS315

78.049

68.333

0.533


Multiple sequence alignment